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C1orf101 (chromosome 1 open reading frame 101)

Identity

Alias_symbol (synonym)MGC33370
Other alias-
HGNC (Hugo) C1orf101
LocusID (NCBI) 257044
Atlas_Id 61044
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 244624673 and ends at 244803662 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C1orf101 (1q44) / C1orf101 (1q44)DESI2 (1q44) / C1orf101 (1q44)RPS6KC1 (1q32.3) / C1orf101 (1q44)
SDCCAG8 (1q43) / C1orf101 (1q44)SDCCAG8 C1orf101RPS6KC1 C1orf101
PPPDE1 C1orf101

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf101   28491
Cards
Entrez_Gene (NCBI)C1orf101  257044  chromosome 1 open reading frame 101
Aliases
GeneCards (Weizmann)C1orf101
Ensembl hg19 (Hinxton)ENSG00000179397 [Gene_View]  chr1:244624673-244803662 [Contig_View]  C1orf101 [Vega]
Ensembl hg38 (Hinxton)ENSG00000179397 [Gene_View]  chr1:244624673-244803662 [Contig_View]  C1orf101 [Vega]
ICGC DataPortalENSG00000179397
TCGA cBioPortalC1orf101
AceView (NCBI)C1orf101
Genatlas (Paris)C1orf101
WikiGenes257044
SOURCE (Princeton)C1orf101
Genetics Home Reference (NIH)C1orf101
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf101  -     chr1:244624673-244803662 +  1q44   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf101  -     1q44   [Description]    (hg38-Dec_2013)
EnsemblC1orf101 - 1q44 [CytoView hg19]  C1orf101 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIC1orf101 [Mapview hg19]  C1orf101 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027205 AK302609 AK303059 BC028392 BC032859
RefSeq transcript (Entrez)NM_001130957 NM_001242340 NM_173807
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_029082 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)C1orf101
Cluster EST : UnigeneHs.459534 [ NCBI ]
CGAP (NCI)Hs.459534
Alternative Splicing GalleryENSG00000179397
Gene ExpressionC1orf101 [ NCBI-GEO ]   C1orf101 [ EBI - ARRAY_EXPRESS ]   C1orf101 [ SEEK ]   C1orf101 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf101 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)257044
GTEX Portal (Tissue expression)C1orf101
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SY80   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SY80  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SY80
Splice isoforms : SwissVarQ5SY80
PhosPhoSitePlusQ5SY80
Domains : Interpro (EBI)CATSPERD   
Domain families : Pfam (Sanger)CATSPERD (PF15020)   
Domain families : Pfam (NCBI)pfam15020   
Conserved Domain (NCBI)C1orf101
DMDM Disease mutations257044
Blocks (Seattle)C1orf101
SuperfamilyQ5SY80
Human Protein AtlasENSG00000179397
Peptide AtlasQ5SY80
HPRD14561
IPIIPI00217937   IPI00645983   IPI01009770   IPI00514357   
Protein Interaction databases
DIP (DOE-UCLA)Q5SY80
IntAct (EBI)Q5SY80
FunCoupENSG00000179397
BioGRIDC1orf101
STRING (EMBL)C1orf101
ZODIACC1orf101
Ontologies - Pathways
QuickGOQ5SY80
Ontology : AmiGOCatSper complex  
Ontology : EGO-EBICatSper complex  
NDEx NetworkC1orf101
Atlas of Cancer Signalling NetworkC1orf101
Wikipedia pathwaysC1orf101
Orthology - Evolution
OrthoDB257044
GeneTree (enSembl)ENSG00000179397
Phylogenetic Trees/Animal Genes : TreeFamC1orf101
HOVERGENQ5SY80
HOGENOMQ5SY80
Homologs : HomoloGeneC1orf101
Homology/Alignments : Family Browser (UCSC)C1orf101
Gene fusions - Rearrangements
Fusion: TCGASDCCAG8 C1orf101
Fusion: TCGARPS6KC1 C1orf101
Fusion: TCGAPPPDE1 C1orf101
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf101 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf101
dbVarC1orf101
ClinVarC1orf101
1000_GenomesC1orf101 
Exome Variant ServerC1orf101
ExAC (Exome Aggregation Consortium)C1orf101 (select the gene name)
Genetic variants : HAPMAP257044
Genomic Variants (DGV)C1orf101 [DGVbeta]
DECIPHER (Syndromes)1:244624673-244803662  ENSG00000179397
CONAN: Copy Number AnalysisC1orf101 
Mutations
ICGC Data PortalC1orf101 
TCGA Data PortalC1orf101 
Broad Tumor PortalC1orf101
OASIS PortalC1orf101 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf101  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf101
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf101
DgiDB (Drug Gene Interaction Database)C1orf101
DoCM (Curated mutations)C1orf101 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf101 (select a term)
intoGenC1orf101
Cancer3DC1orf101(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf101
Genetic Testing Registry C1orf101
NextProtQ5SY80 [Medical]
TSGene257044
GENETestsC1orf101
Huge Navigator C1orf101 [HugePedia]
snp3D : Map Gene to Disease257044
BioCentury BCIQC1orf101
ClinGenC1orf101
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD257044
Chemical/Pharm GKB GenePA142672485
Clinical trialC1orf101
Miscellaneous
canSAR (ICR)C1orf101 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf101
EVEXC1orf101
GoPubMedC1orf101
iHOPC1orf101
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:53 CET 2017

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