Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf105 (chromosome 1 open reading frame 105)

Identity

Other alias-
HGNC (Hugo) C1orf105
LocusID (NCBI) 92346
Atlas_Id 61045
Location 1q24.3  [Link to chromosome band 1q24]
Location_base_pair Starts at 172452893 and ends at 172468829 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SUCO (1q24.3) / C1orf105 (1q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf105   29591
Cards
Entrez_Gene (NCBI)C1orf105  92346  chromosome 1 open reading frame 105
Aliases
GeneCards (Weizmann)C1orf105
Ensembl hg19 (Hinxton)ENSG00000180999 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180999 [Gene_View]  chr1:172452893-172468829 [Contig_View]  C1orf105 [Vega]
ICGC DataPortalENSG00000180999
TCGA cBioPortalC1orf105
AceView (NCBI)C1orf105
Genatlas (Paris)C1orf105
WikiGenes92346
SOURCE (Princeton)C1orf105
Genetics Home Reference (NIH)C1orf105
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf105  -     chr1:172452893-172468829 +  1q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf105  -     1q24.3   [Description]    (hg19-Feb_2009)
EnsemblC1orf105 - 1q24.3 [CytoView hg19]  C1orf105 - 1q24.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf105 [Mapview hg19]  C1orf105 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL035295 BC038410
RefSeq transcript (Entrez)NM_001300760 NM_139240
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf105
Cluster EST : UnigeneHs.517991 [ NCBI ]
CGAP (NCI)Hs.517991
Alternative Splicing GalleryENSG00000180999
Gene ExpressionC1orf105 [ NCBI-GEO ]   C1orf105 [ EBI - ARRAY_EXPRESS ]   C1orf105 [ SEEK ]   C1orf105 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf105 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92346
GTEX Portal (Tissue expression)C1orf105
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95561   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95561  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95561
Splice isoforms : SwissVarO95561
PhosPhoSitePlusO95561
Domains : Interpro (EBI)DUF4548   
Domain families : Pfam (Sanger)DUF4548 (PF15081)   
Domain families : Pfam (NCBI)pfam15081   
Conserved Domain (NCBI)C1orf105
DMDM Disease mutations92346
Blocks (Seattle)C1orf105
SuperfamilyO95561
Human Protein AtlasENSG00000180999
Peptide AtlasO95561
HPRD14291
IPIIPI00029556   IPI00642854   IPI00980988   IPI00985275   
Protein Interaction databases
DIP (DOE-UCLA)O95561
IntAct (EBI)O95561
FunCoupENSG00000180999
BioGRIDC1orf105
STRING (EMBL)C1orf105
ZODIACC1orf105
Ontologies - Pathways
QuickGOO95561
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC1orf105
Atlas of Cancer Signalling NetworkC1orf105
Wikipedia pathwaysC1orf105
Orthology - Evolution
OrthoDB92346
GeneTree (enSembl)ENSG00000180999
Phylogenetic Trees/Animal Genes : TreeFamC1orf105
HOVERGENO95561
HOGENOMO95561
Homologs : HomoloGeneC1orf105
Homology/Alignments : Family Browser (UCSC)C1orf105
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf105 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf105
dbVarC1orf105
ClinVarC1orf105
1000_GenomesC1orf105 
Exome Variant ServerC1orf105
ExAC (Exome Aggregation Consortium)C1orf105 (select the gene name)
Genetic variants : HAPMAP92346
Genomic Variants (DGV)C1orf105 [DGVbeta]
DECIPHERC1orf105 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf105 
Mutations
ICGC Data PortalC1orf105 
TCGA Data PortalC1orf105 
Broad Tumor PortalC1orf105
OASIS PortalC1orf105 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf105  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf105
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf105
DgiDB (Drug Gene Interaction Database)C1orf105
DoCM (Curated mutations)C1orf105 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf105 (select a term)
intoGenC1orf105
Cancer3DC1orf105(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf105
Genetic Testing Registry C1orf105
NextProtO95561 [Medical]
TSGene92346
GENETestsC1orf105
Target ValidationC1orf105
Huge Navigator C1orf105 [HugePedia]
snp3D : Map Gene to Disease92346
BioCentury BCIQC1orf105
ClinGenC1orf105
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92346
Chemical/Pharm GKB GenePA142672489
Clinical trialC1orf105
Miscellaneous
canSAR (ICR)C1orf105 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf105
EVEXC1orf105
GoPubMedC1orf105
iHOPC1orf105
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:00 CEST 2017

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