Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C1orf106 (chromosome 1 open reading frame 106)

Identity

Alias_symbol (synonym)FLJ10901
Other alias-
HGNC (Hugo) C1orf106
LocusID (NCBI) 55765
Atlas_Id 61046
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 200894821 and ends at 200915736 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACOX3 (4p16.1) / C1orf106 (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf106   25599
Cards
Entrez_Gene (NCBI)C1orf106  55765  chromosome 1 open reading frame 106
Aliases
GeneCards (Weizmann)C1orf106
Ensembl hg19 (Hinxton)ENSG00000163362 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163362 [Gene_View]  chr1:200894821-200915736 [Contig_View]  C1orf106 [Vega]
ICGC DataPortalENSG00000163362
TCGA cBioPortalC1orf106
AceView (NCBI)C1orf106
Genatlas (Paris)C1orf106
WikiGenes55765
SOURCE (Princeton)C1orf106
Genetics Home Reference (NIH)C1orf106
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf106  -     chr1:200894821-200915736 +  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf106  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblC1orf106 - 1q32.1 [CytoView hg19]  C1orf106 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIC1orf106 [Mapview hg19]  C1orf106 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001583 AK001763 AK025066 AK303885 AK316510
RefSeq transcript (Entrez)NM_001142569 NM_018265
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf106
Cluster EST : UnigeneHs.518997 [ NCBI ]
CGAP (NCI)Hs.518997
Alternative Splicing GalleryENSG00000163362
Gene ExpressionC1orf106 [ NCBI-GEO ]   C1orf106 [ EBI - ARRAY_EXPRESS ]   C1orf106 [ SEEK ]   C1orf106 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf106 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55765
GTEX Portal (Tissue expression)C1orf106
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KP66   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KP66  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KP66
Splice isoforms : SwissVarQ3KP66
PhosPhoSitePlusQ3KP66
Domains : Interpro (EBI)DUF3338   
Domain families : Pfam (Sanger)DUF3338 (PF11819)   
Domain families : Pfam (NCBI)pfam11819   
Conserved Domain (NCBI)C1orf106
DMDM Disease mutations55765
Blocks (Seattle)C1orf106
SuperfamilyQ3KP66
Human Protein AtlasENSG00000163362
Peptide AtlasQ3KP66
HPRD07712
IPIIPI00019430   IPI00974032   IPI00979307   IPI01012185   
Protein Interaction databases
DIP (DOE-UCLA)Q3KP66
IntAct (EBI)Q3KP66
FunCoupENSG00000163362
BioGRIDC1orf106
STRING (EMBL)C1orf106
ZODIACC1orf106
Ontologies - Pathways
QuickGOQ3KP66
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf106
Atlas of Cancer Signalling NetworkC1orf106
Wikipedia pathwaysC1orf106
Orthology - Evolution
OrthoDB55765
GeneTree (enSembl)ENSG00000163362
Phylogenetic Trees/Animal Genes : TreeFamC1orf106
HOVERGENQ3KP66
HOGENOMQ3KP66
Homologs : HomoloGeneC1orf106
Homology/Alignments : Family Browser (UCSC)C1orf106
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf106 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf106
dbVarC1orf106
ClinVarC1orf106
1000_GenomesC1orf106 
Exome Variant ServerC1orf106
ExAC (Exome Aggregation Consortium)C1orf106 (select the gene name)
Genetic variants : HAPMAP55765
Genomic Variants (DGV)C1orf106 [DGVbeta]
DECIPHERC1orf106 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf106 
Mutations
ICGC Data PortalC1orf106 
TCGA Data PortalC1orf106 
Broad Tumor PortalC1orf106
OASIS PortalC1orf106 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf106  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf106
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf106
DgiDB (Drug Gene Interaction Database)C1orf106
DoCM (Curated mutations)C1orf106 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf106 (select a term)
intoGenC1orf106
Cancer3DC1orf106(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf106
Genetic Testing Registry C1orf106
NextProtQ3KP66 [Medical]
TSGene55765
GENETestsC1orf106
Target ValidationC1orf106
Huge Navigator C1orf106 [HugePedia]
snp3D : Map Gene to Disease55765
BioCentury BCIQC1orf106
ClinGenC1orf106
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55765
Chemical/Pharm GKB GenePA142672490
Clinical trialC1orf106
Miscellaneous
canSAR (ICR)C1orf106 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf106
EVEXC1orf106
GoPubMedC1orf106
iHOPC1orf106
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:46 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.