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C1orf109 (chromosome 1 open reading frame 109)

Identity

Alias_symbol (synonym)FLJ20508
Other alias-
HGNC (Hugo) C1orf109
LocusID (NCBI) 54955
Atlas_Id 53727
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 38147242 and ends at 38156267 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf109   26039
Cards
Entrez_Gene (NCBI)C1orf109  54955  chromosome 1 open reading frame 109
Aliases
GeneCards (Weizmann)C1orf109
Ensembl hg19 (Hinxton)ENSG00000116922 [Gene_View]  chr1:38147242-38156267 [Contig_View]  C1orf109 [Vega]
Ensembl hg38 (Hinxton)ENSG00000116922 [Gene_View]  chr1:38147242-38156267 [Contig_View]  C1orf109 [Vega]
ICGC DataPortalENSG00000116922
TCGA cBioPortalC1orf109
AceView (NCBI)C1orf109
Genatlas (Paris)C1orf109
WikiGenes54955
SOURCE (Princeton)C1orf109
Genetics Home Reference (NIH)C1orf109
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf109  -     chr1:38147242-38156267 -  1p34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf109  -     1p34.3   [Description]    (hg38-Dec_2013)
EnsemblC1orf109 - 1p34.3 [CytoView hg19]  C1orf109 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf109 [Mapview hg19]  C1orf109 [Mapview hg38]
OMIM614799   
Gene and transcription
Genbank (Entrez)AK000515 AK056029 AK092319 AK299377 AK316093
RefSeq transcript (Entrez)NM_001303030 NM_001303031 NM_017850
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)C1orf109
Cluster EST : UnigeneHs.272673 [ NCBI ]
CGAP (NCI)Hs.272673
Alternative Splicing GalleryENSG00000116922
Gene ExpressionC1orf109 [ NCBI-GEO ]   C1orf109 [ EBI - ARRAY_EXPRESS ]   C1orf109 [ SEEK ]   C1orf109 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf109 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54955
GTEX Portal (Tissue expression)C1orf109
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX04
Splice isoforms : SwissVarQ9NX04
PhosPhoSitePlusQ9NX04
Domains : Interpro (EBI)CK2S   
Domain families : Pfam (Sanger)CK2S (PF15011)   
Domain families : Pfam (NCBI)pfam15011   
Conserved Domain (NCBI)C1orf109
DMDM Disease mutations54955
Blocks (Seattle)C1orf109
SuperfamilyQ9NX04
Human Protein AtlasENSG00000116922
Peptide AtlasQ9NX04
HPRD07918
IPIIPI00828185   IPI00016478   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX04
IntAct (EBI)Q9NX04
FunCoupENSG00000116922
BioGRIDC1orf109
STRING (EMBL)C1orf109
ZODIACC1orf109
Ontologies - Pathways
QuickGOQ9NX04
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC1orf109
Atlas of Cancer Signalling NetworkC1orf109
Wikipedia pathwaysC1orf109
Orthology - Evolution
OrthoDB54955
GeneTree (enSembl)ENSG00000116922
Phylogenetic Trees/Animal Genes : TreeFamC1orf109
HOVERGENQ9NX04
HOGENOMQ9NX04
Homologs : HomoloGeneC1orf109
Homology/Alignments : Family Browser (UCSC)C1orf109
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf109 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf109
dbVarC1orf109
ClinVarC1orf109
1000_GenomesC1orf109 
Exome Variant ServerC1orf109
ExAC (Exome Aggregation Consortium)C1orf109 (select the gene name)
Genetic variants : HAPMAP54955
Genomic Variants (DGV)C1orf109 [DGVbeta]
DECIPHER (Syndromes)1:38147242-38156267  ENSG00000116922
CONAN: Copy Number AnalysisC1orf109 
Mutations
ICGC Data PortalC1orf109 
TCGA Data PortalC1orf109 
Broad Tumor PortalC1orf109
OASIS PortalC1orf109 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf109  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf109
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf109
DgiDB (Drug Gene Interaction Database)C1orf109
DoCM (Curated mutations)C1orf109 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf109 (select a term)
intoGenC1orf109
Cancer3DC1orf109(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614799   
Orphanet
MedgenC1orf109
Genetic Testing Registry C1orf109
NextProtQ9NX04 [Medical]
TSGene54955
GENETestsC1orf109
Huge Navigator C1orf109 [HugePedia]
snp3D : Map Gene to Disease54955
BioCentury BCIQC1orf109
ClinGenC1orf109
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54955
Chemical/Pharm GKB GenePA142672493
Clinical trialC1orf109
Miscellaneous
canSAR (ICR)C1orf109 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf109
EVEXC1orf109
GoPubMedC1orf109
iHOPC1orf109
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:28 CEST 2017

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