Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C1orf110 (chromosome 1 open reading frame 110)

Identity

Other alias-
HGNC (Hugo) C1orf110
LocusID (NCBI) 339512
Atlas_Id 61047
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 162824087 and ends at 162838605 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf110   28736
Cards
Entrez_Gene (NCBI)C1orf110  339512  chromosome 1 open reading frame 110
Aliases
GeneCards (Weizmann)C1orf110
Ensembl hg19 (Hinxton)ENSG00000185860 [Gene_View]  chr1:162824087-162838605 [Contig_View]  C1orf110 [Vega]
Ensembl hg38 (Hinxton)ENSG00000185860 [Gene_View]  chr1:162824087-162838605 [Contig_View]  C1orf110 [Vega]
ICGC DataPortalENSG00000185860
TCGA cBioPortalC1orf110
AceView (NCBI)C1orf110
Genatlas (Paris)C1orf110
WikiGenes339512
SOURCE (Princeton)C1orf110
Genetics Home Reference (NIH)C1orf110
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf110  -     chr1:162824087-162838605 -  1q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf110  -     1q23.3   [Description]    (hg38-Dec_2013)
EnsemblC1orf110 - 1q23.3 [CytoView hg19]  C1orf110 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf110 [Mapview hg19]  C1orf110 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123573 AK309620 BC040018
RefSeq transcript (Entrez)NM_178550
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)C1orf110
Cluster EST : UnigeneHs.407631 [ NCBI ]
CGAP (NCI)Hs.407631
Alternative Splicing GalleryENSG00000185860
Gene ExpressionC1orf110 [ NCBI-GEO ]   C1orf110 [ EBI - ARRAY_EXPRESS ]   C1orf110 [ SEEK ]   C1orf110 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf110 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339512
GTEX Portal (Tissue expression)C1orf110
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UF4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UF4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UF4
Splice isoforms : SwissVarQ86UF4
PhosPhoSitePlusQ86UF4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf110
DMDM Disease mutations339512
Blocks (Seattle)C1orf110
SuperfamilyQ86UF4
Human Protein AtlasENSG00000185860
Peptide AtlasQ86UF4
HPRD14661
IPIIPI00244135   IPI00828155   IPI00640277   
Protein Interaction databases
DIP (DOE-UCLA)Q86UF4
IntAct (EBI)Q86UF4
FunCoupENSG00000185860
BioGRIDC1orf110
STRING (EMBL)C1orf110
ZODIACC1orf110
Ontologies - Pathways
QuickGOQ86UF4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf110
Atlas of Cancer Signalling NetworkC1orf110
Wikipedia pathwaysC1orf110
Orthology - Evolution
OrthoDB339512
GeneTree (enSembl)ENSG00000185860
Phylogenetic Trees/Animal Genes : TreeFamC1orf110
HOVERGENQ86UF4
HOGENOMQ86UF4
Homologs : HomoloGeneC1orf110
Homology/Alignments : Family Browser (UCSC)C1orf110
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf110 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf110
dbVarC1orf110
ClinVarC1orf110
1000_GenomesC1orf110 
Exome Variant ServerC1orf110
ExAC (Exome Aggregation Consortium)C1orf110 (select the gene name)
Genetic variants : HAPMAP339512
Genomic Variants (DGV)C1orf110 [DGVbeta]
DECIPHER (Syndromes)1:162824087-162838605  ENSG00000185860
CONAN: Copy Number AnalysisC1orf110 
Mutations
ICGC Data PortalC1orf110 
TCGA Data PortalC1orf110 
Broad Tumor PortalC1orf110
OASIS PortalC1orf110 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf110  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf110
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf110
DgiDB (Drug Gene Interaction Database)C1orf110
DoCM (Curated mutations)C1orf110 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf110 (select a term)
intoGenC1orf110
Cancer3DC1orf110(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf110
Genetic Testing Registry C1orf110
NextProtQ86UF4 [Medical]
TSGene339512
GENETestsC1orf110
Huge Navigator C1orf110 [HugePedia]
snp3D : Map Gene to Disease339512
BioCentury BCIQC1orf110
ClinGenC1orf110
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339512
Chemical/Pharm GKB GenePA142672494
Clinical trialC1orf110
Miscellaneous
canSAR (ICR)C1orf110 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf110
EVEXC1orf110
GoPubMedC1orf110
iHOPC1orf110
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:53 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.