Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf111 (chromosome 1 open reading frame 111)

Identity

Other aliasHSD20
HGNC (Hugo) C1orf111
LocusID (NCBI) 284680
Atlas_Id 61048
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 162343515 and ends at 162346644 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C1orf111 (1q23.3) / SRC (20q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf111   27648
Cards
Entrez_Gene (NCBI)C1orf111  284680  chromosome 1 open reading frame 111
AliasesHSD20
GeneCards (Weizmann)C1orf111
Ensembl hg19 (Hinxton) [Gene_View]  chr1:162343515-162346644 [Contig_View]  C1orf111 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:162343515-162346644 [Contig_View]  C1orf111 [Vega]
TCGA cBioPortalC1orf111
AceView (NCBI)C1orf111
Genatlas (Paris)C1orf111
WikiGenes284680
SOURCE (Princeton)C1orf111
Genetics Home Reference (NIH)C1orf111
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf111  -     chr1:162343515-162346644 -  1q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf111  -     1q23.3   [Description]    (hg38-Dec_2013)
EnsemblC1orf111 - 1q23.3 [CytoView hg19]  C1orf111 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf111 [Mapview hg19]  C1orf111 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY248900 BC032957 HQ448371
RefSeq transcript (Entrez)NM_182581
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)C1orf111
Cluster EST : UnigeneHs.97784 [ NCBI ]
CGAP (NCI)Hs.97784
Gene ExpressionC1orf111 [ NCBI-GEO ]   C1orf111 [ EBI - ARRAY_EXPRESS ]   C1orf111 [ SEEK ]   C1orf111 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf111 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284680
GTEX Portal (Tissue expression)C1orf111
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T0L3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T0L3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T0L3
Splice isoforms : SwissVarQ5T0L3
PhosPhoSitePlusQ5T0L3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf111
DMDM Disease mutations284680
Blocks (Seattle)C1orf111
SuperfamilyQ5T0L3
Peptide AtlasQ5T0L3
HPRD14154
IPIIPI00302311   IPI00844204   
Protein Interaction databases
DIP (DOE-UCLA)Q5T0L3
IntAct (EBI)Q5T0L3
BioGRIDC1orf111
STRING (EMBL)C1orf111
ZODIACC1orf111
Ontologies - Pathways
QuickGOQ5T0L3
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC1orf111
Atlas of Cancer Signalling NetworkC1orf111
Wikipedia pathwaysC1orf111
Orthology - Evolution
OrthoDB284680
Phylogenetic Trees/Animal Genes : TreeFamC1orf111
HOVERGENQ5T0L3
HOGENOMQ5T0L3
Homologs : HomoloGeneC1orf111
Homology/Alignments : Family Browser (UCSC)C1orf111
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf111 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf111
dbVarC1orf111
ClinVarC1orf111
1000_GenomesC1orf111 
Exome Variant ServerC1orf111
ExAC (Exome Aggregation Consortium)C1orf111 (select the gene name)
Genetic variants : HAPMAP284680
Genomic Variants (DGV)C1orf111 [DGVbeta]
DECIPHER (Syndromes)1:162343515-162346644  
CONAN: Copy Number AnalysisC1orf111 
Mutations
ICGC Data PortalC1orf111 
TCGA Data PortalC1orf111 
Broad Tumor PortalC1orf111
OASIS PortalC1orf111 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf111  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf111
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf111
DgiDB (Drug Gene Interaction Database)C1orf111
DoCM (Curated mutations)C1orf111 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf111 (select a term)
intoGenC1orf111
Cancer3DC1orf111(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf111
Genetic Testing Registry C1orf111
NextProtQ5T0L3 [Medical]
TSGene284680
GENETestsC1orf111
Huge Navigator C1orf111 [HugePedia]
snp3D : Map Gene to Disease284680
BioCentury BCIQC1orf111
ClinGenC1orf111
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284680
Chemical/Pharm GKB GenePA142672495
Clinical trialC1orf111
Miscellaneous
canSAR (ICR)C1orf111 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf111
EVEXC1orf111
GoPubMedC1orf111
iHOPC1orf111
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:53 CET 2017

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