Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf112 (chromosome 1 open reading frame 112)

Identity

Alias_symbol (synonym)FLJ10706
Other alias-
HGNC (Hugo) C1orf112
LocusID (NCBI) 55732
Atlas_Id 61049
Location 1q24.2  [Link to chromosome band 1q24]
Location_base_pair Starts at 169794999 and ends at 169853088 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C1orf112 (1q24.2) / HSP90AA1 (14q32.31)C1orf112 (1q24.2) / NEGR1 (1p31.1)NBPF14 (1q21.2) / C1orf112 (1q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf112   25565
Cards
Entrez_Gene (NCBI)C1orf112  55732  chromosome 1 open reading frame 112
Aliases
GeneCards (Weizmann)C1orf112
Ensembl hg19 (Hinxton)ENSG00000000460 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000000460 [Gene_View]  chr1:169794999-169853088 [Contig_View]  C1orf112 [Vega]
ICGC DataPortalENSG00000000460
TCGA cBioPortalC1orf112
AceView (NCBI)C1orf112
Genatlas (Paris)C1orf112
WikiGenes55732
SOURCE (Princeton)C1orf112
Genetics Home Reference (NIH)C1orf112
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf112  -     chr1:169794999-169853088 +  1q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf112  -     1q24.2   [Description]    (hg19-Feb_2009)
EnsemblC1orf112 - 1q24.2 [CytoView hg19]  C1orf112 - 1q24.2 [CytoView hg38]
Mapping of homologs : NCBIC1orf112 [Mapview hg19]  C1orf112 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001568 AK023532 AK096493 AK127098 AK294569
RefSeq transcript (Entrez)NM_001320047 NM_001320048 NM_001320050 NM_001320051 NM_018186
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf112
Cluster EST : UnigeneHs.443551 [ NCBI ]
CGAP (NCI)Hs.443551
Alternative Splicing GalleryENSG00000000460
Gene ExpressionC1orf112 [ NCBI-GEO ]   C1orf112 [ EBI - ARRAY_EXPRESS ]   C1orf112 [ SEEK ]   C1orf112 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf112 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55732
GTEX Portal (Tissue expression)C1orf112
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NSG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NSG2
Splice isoforms : SwissVarQ9NSG2
PhosPhoSitePlusQ9NSG2
Domains : Interpro (EBI)DUF4487   
Domain families : Pfam (Sanger)DUF4487 (PF14868)   
Domain families : Pfam (NCBI)pfam14868   
Conserved Domain (NCBI)C1orf112
DMDM Disease mutations55732
Blocks (Seattle)C1orf112
SuperfamilyQ9NSG2
Human Protein AtlasENSG00000000460
Peptide AtlasQ9NSG2
HPRD07694
IPIIPI00178512   IPI00830022   IPI00830049   IPI00909924   IPI00910478   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSG2
IntAct (EBI)Q9NSG2
FunCoupENSG00000000460
BioGRIDC1orf112
STRING (EMBL)C1orf112
ZODIACC1orf112
Ontologies - Pathways
QuickGOQ9NSG2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf112
Atlas of Cancer Signalling NetworkC1orf112
Wikipedia pathwaysC1orf112
Orthology - Evolution
OrthoDB55732
GeneTree (enSembl)ENSG00000000460
Phylogenetic Trees/Animal Genes : TreeFamC1orf112
HOVERGENQ9NSG2
HOGENOMQ9NSG2
Homologs : HomoloGeneC1orf112
Homology/Alignments : Family Browser (UCSC)C1orf112
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf112 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf112
dbVarC1orf112
ClinVarC1orf112
1000_GenomesC1orf112 
Exome Variant ServerC1orf112
ExAC (Exome Aggregation Consortium)C1orf112 (select the gene name)
Genetic variants : HAPMAP55732
Genomic Variants (DGV)C1orf112 [DGVbeta]
DECIPHERC1orf112 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf112 
Mutations
ICGC Data PortalC1orf112 
TCGA Data PortalC1orf112 
Broad Tumor PortalC1orf112
OASIS PortalC1orf112 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf112  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf112
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf112
DgiDB (Drug Gene Interaction Database)C1orf112
DoCM (Curated mutations)C1orf112 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf112 (select a term)
intoGenC1orf112
Cancer3DC1orf112(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf112
Genetic Testing Registry C1orf112
NextProtQ9NSG2 [Medical]
TSGene55732
GENETestsC1orf112
Target ValidationC1orf112
Huge Navigator C1orf112 [HugePedia]
snp3D : Map Gene to Disease55732
BioCentury BCIQC1orf112
ClinGenC1orf112
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55732
Chemical/Pharm GKB GenePA142672496
Clinical trialC1orf112
Miscellaneous
canSAR (ICR)C1orf112 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf112
EVEXC1orf112
GoPubMedC1orf112
iHOPC1orf112
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:10:46 CEST 2017

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