Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf115 (chromosome 1 open reading frame 115)

Identity

Alias (NCBI)-
HGNC (Hugo) C1orf115
HGNC Alias symbFLJ14146
LocusID (NCBI) 79762
Atlas_Id 61050
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 220690286 and ends at 220699157 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C1orf115 (1q41) / DHX40 (17q23.1)LOC200772 (2q37.3) / C1orf115 (1q41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)C1orf115   25873
Cards
Entrez_Gene (NCBI)C1orf115    chromosome 1 open reading frame 115
Aliases
GeneCards (Weizmann)C1orf115
Ensembl hg19 (Hinxton)ENSG00000162817 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162817 [Gene_View]  ENSG00000162817 [Sequence]  chr1:220690286-220699157 [Contig_View]  C1orf115 [Vega]
ICGC DataPortalENSG00000162817
TCGA cBioPortalC1orf115
AceView (NCBI)C1orf115
Genatlas (Paris)C1orf115
SOURCE (Princeton)C1orf115
Genetics Home Reference (NIH)C1orf115
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf115  -     chr1:220690286-220699157 +  1q41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf115  -     1q41   [Description]    (hg19-Feb_2009)
GoldenPathC1orf115 - 1q41 [CytoView hg19]  C1orf115 - 1q41 [CytoView hg38]
ImmunoBaseENSG00000162817
genome Data Viewer NCBIC1orf115 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI188887 AK024208 AK056749 AK091937 AK125403
RefSeq transcript (Entrez)NM_024709
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf115
Alternative Splicing GalleryENSG00000162817
Gene ExpressionC1orf115 [ NCBI-GEO ]   C1orf115 [ EBI - ARRAY_EXPRESS ]   C1orf115 [ SEEK ]   C1orf115 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf115 [ Firebrowse - Broad ]
GenevisibleExpression of C1orf115 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79762
GTEX Portal (Tissue expression)C1orf115
Human Protein AtlasENSG00000162817-C1orf115 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7X2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7X2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7X2
Splice isoforms : SwissVarQ9H7X2
PhosPhoSitePlusQ9H7X2
Domains : Interpro (EBI)DUF4710   
Domain families : Pfam (Sanger)DUF4710 (PF15828)   
Domain families : Pfam (NCBI)pfam15828   
Conserved Domain (NCBI)C1orf115
Blocks (Seattle)C1orf115
SuperfamilyQ9H7X2
Human Protein Atlas [tissue]ENSG00000162817-C1orf115 [tissue]
Peptide AtlasQ9H7X2
HPRD08596
IPIIPI00003030   IPI00978210   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7X2
IntAct (EBI)Q9H7X2
BioGRIDC1orf115
STRING (EMBL)C1orf115
ZODIACC1orf115
Ontologies - Pathways
QuickGOQ9H7X2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC1orf115
Atlas of Cancer Signalling NetworkC1orf115
Wikipedia pathwaysC1orf115
Orthology - Evolution
OrthoDB79762
GeneTree (enSembl)ENSG00000162817
Phylogenetic Trees/Animal Genes : TreeFamC1orf115
HOGENOMQ9H7X2
Homologs : HomoloGeneC1orf115
Homology/Alignments : Family Browser (UCSC)C1orf115
Gene fusions - Rearrangements
Fusion : QuiverC1orf115
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf115 [hg38]
dbVarC1orf115
ClinVarC1orf115
MonarchC1orf115
1000_GenomesC1orf115 
Exome Variant ServerC1orf115
GNOMAD BrowserENSG00000162817
Varsome BrowserC1orf115
Genomic Variants (DGV)C1orf115 [DGVbeta]
DECIPHERC1orf115 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf115 
Mutations
ICGC Data PortalC1orf115 
TCGA Data PortalC1orf115 
Broad Tumor PortalC1orf115
OASIS PortalC1orf115 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf115  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC1orf115
Mutations and Diseases : HGMDC1orf115
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf115
DgiDB (Drug Gene Interaction Database)C1orf115
DoCM (Curated mutations)C1orf115 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf115 (select a term)
intoGenC1orf115
Cancer3DC1orf115(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC1orf115
MedgenC1orf115
Genetic Testing Registry C1orf115
NextProtQ9H7X2 [Medical]
GENETestsC1orf115
Target ValidationC1orf115
Huge Navigator C1orf115 [HugePedia]
ClinGenC1orf115
Clinical trials, drugs, therapy
MyCancerGenomeC1orf115
Protein Interactions : CTD
Pharm GKB GenePA142672499
Clinical trialC1orf115
Miscellaneous
canSAR (ICR)C1orf115 (select the gene name)
HarmonizomeC1orf115
DataMed IndexC1orf115
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf115
EVEXC1orf115
GoPubMedC1orf115
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:47:47 CET 2020

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