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C1orf115 (chromosome 1 open reading frame 115)

Identity

Alias_symbol (synonym)FLJ14146
Other alias-
HGNC (Hugo) C1orf115
LocusID (NCBI) 79762
Atlas_Id 61050
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 220690286 and ends at 220699157 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C1orf115 (1q41) / DHX40 (17q23.1)LOC200772 (2q37.3) / C1orf115 (1q41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf115   25873
Cards
Entrez_Gene (NCBI)C1orf115  79762  chromosome 1 open reading frame 115
Aliases
GeneCards (Weizmann)C1orf115
Ensembl hg19 (Hinxton)ENSG00000162817 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162817 [Gene_View]  chr1:220690286-220699157 [Contig_View]  C1orf115 [Vega]
ICGC DataPortalENSG00000162817
TCGA cBioPortalC1orf115
AceView (NCBI)C1orf115
Genatlas (Paris)C1orf115
WikiGenes79762
SOURCE (Princeton)C1orf115
Genetics Home Reference (NIH)C1orf115
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf115  -     chr1:220690286-220699157 +  1q41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf115  -     1q41   [Description]    (hg19-Feb_2009)
EnsemblC1orf115 - 1q41 [CytoView hg19]  C1orf115 - 1q41 [CytoView hg38]
Mapping of homologs : NCBIC1orf115 [Mapview hg19]  C1orf115 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI188887 AK024208 AK056749 AK091937 AK125403
RefSeq transcript (Entrez)NM_024709
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf115
Cluster EST : UnigeneHs.519839 [ NCBI ]
CGAP (NCI)Hs.519839
Alternative Splicing GalleryENSG00000162817
Gene ExpressionC1orf115 [ NCBI-GEO ]   C1orf115 [ EBI - ARRAY_EXPRESS ]   C1orf115 [ SEEK ]   C1orf115 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf115 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79762
ĒTE\ Portal (Tissue expression)C1orf115
Human Protein AtlasENSG00000162817-C1orf115 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7X2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7X2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7X2
Splice isoforms : SwissVarQ9H7X2
PhosPhoSitePlusQ9H7X2
Domains : Interpro (EBI)DUF4710   
Domain families : Pfam (Sanger)DUF4710 (PF15828)   
Domain families : Pfam (NCBI)pfam15828   
Conserved Domain (NCBI)C1orf115
DMDM Disease mutations79762
Blocks (Seattle)C1orf115
SuperfamilyQ9H7X2
Human Protein Atlas [tissue]ENSG00000162817-C1orf115 [tissue]
Peptide AtlasQ9H7X2
HPRD08596
IPIIPI00003030   IPI00978210   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7X2
IntAct (EBI)Q9H7X2
FunCoupENSG00000162817
BioGRIDC1orf115
STRING (EMBL)C1orf115
ZODIACC1orf115
Ontologies - Pathways
QuickGOQ9H7X2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC1orf115
Atlas of Cancer Signalling NetworkC1orf115
Wikipedia pathwaysC1orf115
Orthology - Evolution
OrthoDB79762
GeneTree (enSembl)ENSG00000162817
Phylogenetic Trees/Animal Genes : TreeFamC1orf115
HOVERGENQ9H7X2
HOGENOMQ9H7X2
Homologs : HomoloGeneC1orf115
Homology/Alignments : Family Browser (UCSC)C1orf115
Gene fusions - Rearrangements
Fusion: Tumor Portal C1orf115
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf115 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf115
dbVarC1orf115
ClinVarC1orf115
1000_GenomesC1orf115 
Exome Variant ServerC1orf115
ExAC (Exome Aggregation Consortium)ENSG00000162817
GNOMAD BrowserENSG00000162817
Genetic variants : HAPMAP79762
Genomic Variants (DGV)C1orf115 [DGVbeta]
DECIPHERC1orf115 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf115 
Mutations
ICGC Data PortalC1orf115 
TCGA Data PortalC1orf115 
Broad Tumor PortalC1orf115
OASIS PortalC1orf115 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf115  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf115
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf115
DgiDB (Drug Gene Interaction Database)C1orf115
DoCM (Curated mutations)C1orf115 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf115 (select a term)
intoGenC1orf115
Cancer3DC1orf115(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf115
Genetic Testing Registry C1orf115
NextProtQ9H7X2 [Medical]
TSGene79762
GENETestsC1orf115
Target ValidationC1orf115
Huge Navigator C1orf115 [HugePedia]
snp3D : Map Gene to Disease79762
BioCentury BCIQC1orf115
ClinGenC1orf115
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79762
Chemical/Pharm GKB GenePA142672499
Clinical trialC1orf115
Miscellaneous
canSAR (ICR)C1orf115 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf115
EVEXC1orf115
GoPubMedC1orf115
iHOPC1orf115
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:40:05 CET 2017

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