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C1orf116 (chromosome 1 open reading frame 116)

Identity

Alias_symbol (synonym)SARG
FLJ36507
MGC2742
MGC4309
Other alias
HGNC (Hugo) C1orf116
LocusID (NCBI) 79098
Atlas_Id 61051
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 207191866 and ends at 207206101 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C1orf116 (1q32.1) / C1orf116 (1q32.1)C1orf116 (1q32.1) / CLNK (4p16.1)C1orf116 (1q32.1) / LIN9 (1q42.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf116   28667
Cards
Entrez_Gene (NCBI)C1orf116  79098  chromosome 1 open reading frame 116
AliasesSARG
GeneCards (Weizmann)C1orf116
Ensembl hg19 (Hinxton)ENSG00000182795 [Gene_View]  chr1:207191866-207206101 [Contig_View]  C1orf116 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182795 [Gene_View]  chr1:207191866-207206101 [Contig_View]  C1orf116 [Vega]
ICGC DataPortalENSG00000182795
TCGA cBioPortalC1orf116
AceView (NCBI)C1orf116
Genatlas (Paris)C1orf116
WikiGenes79098
SOURCE (Princeton)C1orf116
Genetics Home Reference (NIH)C1orf116
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf116  -     chr1:207191866-207206101 -  1q32.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf116  -     1q32.1   [Description]    (hg38-Dec_2013)
EnsemblC1orf116 - 1q32.1 [CytoView hg19]  C1orf116 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIC1orf116 [Mapview hg19]  C1orf116 [Mapview hg38]
OMIM611680   
Gene and transcription
Genbank (Entrez)AK093826 AK096741 AL832940 AY352640 BC000765
RefSeq transcript (Entrez)NM_001083924 NM_023938
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929294
Consensus coding sequences : CCDS (NCBI)C1orf116
Cluster EST : UnigeneHs.32417 [ NCBI ]
CGAP (NCI)Hs.32417
Alternative Splicing GalleryENSG00000182795
Gene ExpressionC1orf116 [ NCBI-GEO ]   C1orf116 [ EBI - ARRAY_EXPRESS ]   C1orf116 [ SEEK ]   C1orf116 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf116 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79098
GTEX Portal (Tissue expression)C1orf116
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BW04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BW04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BW04
Splice isoforms : SwissVarQ9BW04
PhosPhoSitePlusQ9BW04
Domains : Interpro (EBI)SARG   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf116
DMDM Disease mutations79098
Blocks (Seattle)C1orf116
SuperfamilyQ9BW04
Human Protein AtlasENSG00000182795
Peptide AtlasQ9BW04
HPRD15294
IPIIPI00028392   IPI00845438   IPI00012224   
Protein Interaction databases
DIP (DOE-UCLA)Q9BW04
IntAct (EBI)Q9BW04
FunCoupENSG00000182795
BioGRIDC1orf116
STRING (EMBL)C1orf116
ZODIACC1orf116
Ontologies - Pathways
QuickGOQ9BW04
Ontology : AmiGOmolecular_function  protein binding  cytoplasm  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  protein binding  cytoplasm  biological_process  extracellular exosome  
NDEx NetworkC1orf116
Atlas of Cancer Signalling NetworkC1orf116
Wikipedia pathwaysC1orf116
Orthology - Evolution
OrthoDB79098
GeneTree (enSembl)ENSG00000182795
Phylogenetic Trees/Animal Genes : TreeFamC1orf116
HOVERGENQ9BW04
HOGENOMQ9BW04
Homologs : HomoloGeneC1orf116
Homology/Alignments : Family Browser (UCSC)C1orf116
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf116 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf116
dbVarC1orf116
ClinVarC1orf116
1000_GenomesC1orf116 
Exome Variant ServerC1orf116
ExAC (Exome Aggregation Consortium)C1orf116 (select the gene name)
Genetic variants : HAPMAP79098
Genomic Variants (DGV)C1orf116 [DGVbeta]
DECIPHER (Syndromes)1:207191866-207206101  ENSG00000182795
CONAN: Copy Number AnalysisC1orf116 
Mutations
ICGC Data PortalC1orf116 
TCGA Data PortalC1orf116 
Broad Tumor PortalC1orf116
OASIS PortalC1orf116 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf116  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf116
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf116
DgiDB (Drug Gene Interaction Database)C1orf116
DoCM (Curated mutations)C1orf116 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf116 (select a term)
intoGenC1orf116
Cancer3DC1orf116(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611680   
Orphanet
MedgenC1orf116
Genetic Testing Registry C1orf116
NextProtQ9BW04 [Medical]
TSGene79098
GENETestsC1orf116
Huge Navigator C1orf116 [HugePedia]
snp3D : Map Gene to Disease79098
BioCentury BCIQC1orf116
ClinGenC1orf116
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79098
Chemical/Pharm GKB GenePA142672500
Clinical trialC1orf116
Miscellaneous
canSAR (ICR)C1orf116 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf116
EVEXC1orf116
GoPubMedC1orf116
iHOPC1orf116
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:54 CET 2017

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