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C1orf116 (chromosome 1 open reading frame 116)

Identity

Alias (NCBI)SARG
HGNC (Hugo) C1orf116
HGNC Alias symbSARG
FLJ36507
MGC2742
MGC4309
HGNC Alias namespecifically androgen-regulated gene
LocusID (NCBI) 79098
Atlas_Id 61051
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 207018522 and ends at 207032756 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C1orf116 (1q32.1) / C1orf116 (1q32.1)C1orf116 (1q32.1) / CLNK (4p16.1)C1orf116 (1q32.1) / LIN9 (1q42.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)C1orf116   28667
Cards
Entrez_Gene (NCBI)C1orf116    chromosome 1 open reading frame 116
AliasesSARG
GeneCards (Weizmann)C1orf116
Ensembl hg19 (Hinxton)ENSG00000182795 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182795 [Gene_View]  ENSG00000182795 [Sequence]  chr1:207018522-207032756 [Contig_View]  C1orf116 [Vega]
ICGC DataPortalENSG00000182795
TCGA cBioPortalC1orf116
AceView (NCBI)C1orf116
Genatlas (Paris)C1orf116
SOURCE (Princeton)C1orf116
Genetics Home Reference (NIH)C1orf116
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf116  -     chr1:207018522-207032756 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf116  -     1q32.1   [Description]    (hg19-Feb_2009)
GoldenPathC1orf116 - 1q32.1 [CytoView hg19]  C1orf116 - 1q32.1 [CytoView hg38]
ImmunoBaseENSG00000182795
Genome Data Viewer NCBIC1orf116 [Mapview hg19]  
OMIM611680   
Gene and transcription
Genbank (Entrez)AK093826 AK096741 AL832940 AY352640 BC000765
RefSeq transcript (Entrez)NM_001083924 NM_023938
Consensus coding sequences : CCDS (NCBI)C1orf116
Gene ExpressionC1orf116 [ NCBI-GEO ]   C1orf116 [ EBI - ARRAY_EXPRESS ]   C1orf116 [ SEEK ]   C1orf116 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf116 [ Firebrowse - Broad ]
GenevisibleExpression of C1orf116 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79098
GTEX Portal (Tissue expression)C1orf116
Human Protein AtlasENSG00000182795-C1orf116 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BW04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BW04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BW04
PhosPhoSitePlusQ9BW04
Domains : Interpro (EBI)SARG   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf116
SuperfamilyQ9BW04
AlphaFold pdb e-kbQ9BW04   
Human Protein Atlas [tissue]ENSG00000182795-C1orf116 [tissue]
HPRD15294
Protein Interaction databases
DIP (DOE-UCLA)Q9BW04
IntAct (EBI)Q9BW04
BioGRIDC1orf116
STRING (EMBL)C1orf116
ZODIACC1orf116
Ontologies - Pathways
QuickGOQ9BW04
Ontology : AmiGOmolecular_function  protein binding  cytoplasm  cytoplasm  cytosol  plasma membrane  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  protein binding  cytoplasm  cytoplasm  cytosol  plasma membrane  biological_process  extracellular exosome  
NDEx NetworkC1orf116
Atlas of Cancer Signalling NetworkC1orf116
Wikipedia pathwaysC1orf116
Orthology - Evolution
OrthoDB79098
GeneTree (enSembl)ENSG00000182795
Phylogenetic Trees/Animal Genes : TreeFamC1orf116
Homologs : HomoloGeneC1orf116
Homology/Alignments : Family Browser (UCSC)C1orf116
Gene fusions - Rearrangements
Fusion : QuiverC1orf116
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf116 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf116
dbVarC1orf116
ClinVarC1orf116
MonarchC1orf116
1000_GenomesC1orf116 
Exome Variant ServerC1orf116
GNOMAD BrowserENSG00000182795
Varsome BrowserC1orf116
ACMGC1orf116 variants
VarityQ9BW04
Genomic Variants (DGV)C1orf116 [DGVbeta]
DECIPHERC1orf116 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf116 
Mutations
ICGC Data PortalC1orf116 
TCGA Data PortalC1orf116 
Broad Tumor PortalC1orf116
OASIS PortalC1orf116 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf116  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC1orf116
Mutations and Diseases : HGMDC1orf116
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaC1orf116
DgiDB (Drug Gene Interaction Database)C1orf116
DoCM (Curated mutations)C1orf116
CIViC (Clinical Interpretations of Variants in Cancer)C1orf116
Cancer3DC1orf116
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611680   
Orphanet
DisGeNETC1orf116
MedgenC1orf116
Genetic Testing Registry C1orf116
NextProtQ9BW04 [Medical]
GENETestsC1orf116
Target ValidationC1orf116
Huge Navigator C1orf116 [HugePedia]
ClinGenC1orf116
Clinical trials, drugs, therapy
MyCancerGenomeC1orf116
Protein Interactions : CTDC1orf116
Pharm GKB GenePA142672500
PharosQ9BW04
Clinical trialC1orf116
Miscellaneous
canSAR (ICR)C1orf116
HarmonizomeC1orf116
DataMed IndexC1orf116
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC1orf116
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:44:01 CEST 2021

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