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C1orf122 (chromosome 1 open reading frame 122)

Identity

Alias_symbol (synonym)FLJ45459
Other aliasALAESM
HGNC (Hugo) C1orf122
LocusID (NCBI) 127687
Atlas_Id 61052
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 37807801 and ends at 37809454 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
METRN (16p13.3) / C1orf122 (1p34.3)TMTC1 (12p11.22) / C1orf122 (1p34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf122   24789
Cards
Entrez_Gene (NCBI)C1orf122  127687  chromosome 1 open reading frame 122
AliasesALAESM
GeneCards (Weizmann)C1orf122
Ensembl hg19 (Hinxton)ENSG00000197982 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197982 [Gene_View]  chr1:37807801-37809454 [Contig_View]  C1orf122 [Vega]
ICGC DataPortalENSG00000197982
TCGA cBioPortalC1orf122
AceView (NCBI)C1orf122
Genatlas (Paris)C1orf122
WikiGenes127687
SOURCE (Princeton)C1orf122
Genetics Home Reference (NIH)C1orf122
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf122  -     chr1:37807801-37809454 +  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf122  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblC1orf122 - 1p34.3 [CytoView hg19]  C1orf122 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf122 [Mapview hg19]  C1orf122 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127381 AY517499 BC016402 BC057819 BC102041
RefSeq transcript (Entrez)NM_001142726 NM_198446
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf122
Cluster EST : UnigeneHs.532749 [ NCBI ]
CGAP (NCI)Hs.532749
Alternative Splicing GalleryENSG00000197982
Gene ExpressionC1orf122 [ NCBI-GEO ]   C1orf122 [ EBI - ARRAY_EXPRESS ]   C1orf122 [ SEEK ]   C1orf122 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf122 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127687
GTEX Portal (Tissue expression)C1orf122
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSJ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSJ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSJ8
Splice isoforms : SwissVarQ6ZSJ8
PhosPhoSitePlusQ6ZSJ8
Domains : Interpro (EBI)DUF4726   
Domain families : Pfam (Sanger)DUF4726 (PF15855)   
Domain families : Pfam (NCBI)pfam15855   
Conserved Domain (NCBI)C1orf122
DMDM Disease mutations127687
Blocks (Seattle)C1orf122
SuperfamilyQ6ZSJ8
Human Protein AtlasENSG00000197982
Peptide AtlasQ6ZSJ8
HPRD13508
IPIIPI00394805   IPI00944539   IPI00927378   IPI00477491   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSJ8
IntAct (EBI)Q6ZSJ8
FunCoupENSG00000197982
BioGRIDC1orf122
STRING (EMBL)C1orf122
ZODIACC1orf122
Ontologies - Pathways
QuickGOQ6ZSJ8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf122
Atlas of Cancer Signalling NetworkC1orf122
Wikipedia pathwaysC1orf122
Orthology - Evolution
OrthoDB127687
GeneTree (enSembl)ENSG00000197982
Phylogenetic Trees/Animal Genes : TreeFamC1orf122
HOVERGENQ6ZSJ8
HOGENOMQ6ZSJ8
Homologs : HomoloGeneC1orf122
Homology/Alignments : Family Browser (UCSC)C1orf122
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf122 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf122
dbVarC1orf122
ClinVarC1orf122
1000_GenomesC1orf122 
Exome Variant ServerC1orf122
ExAC (Exome Aggregation Consortium)C1orf122 (select the gene name)
Genetic variants : HAPMAP127687
Genomic Variants (DGV)C1orf122 [DGVbeta]
DECIPHERC1orf122 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf122 
Mutations
ICGC Data PortalC1orf122 
TCGA Data PortalC1orf122 
Broad Tumor PortalC1orf122
OASIS PortalC1orf122 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf122  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf122
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf122
DgiDB (Drug Gene Interaction Database)C1orf122
DoCM (Curated mutations)C1orf122 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf122 (select a term)
intoGenC1orf122
Cancer3DC1orf122(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf122
Genetic Testing Registry C1orf122
NextProtQ6ZSJ8 [Medical]
TSGene127687
GENETestsC1orf122
Target ValidationC1orf122
Huge Navigator C1orf122 [HugePedia]
snp3D : Map Gene to Disease127687
BioCentury BCIQC1orf122
ClinGenC1orf122
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127687
Chemical/Pharm GKB GenePA142672440
Clinical trialC1orf122
Miscellaneous
canSAR (ICR)C1orf122 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf122
EVEXC1orf122
GoPubMedC1orf122
iHOPC1orf122
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:47 CEST 2017

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