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C1orf123 (chromosome 1 open reading frame 123)

Identity

Alias_symbol (synonym)FLJ20580
Other alias-
HGNC (Hugo) C1orf123
LocusID (NCBI) 54987
Atlas_Id 61053
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 53214100 and ends at 53220639 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C1orf123 (1p32.3) / ALG6 (1p31.3)COX6A1 (12q24.31) / C1orf123 (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf123   26059
Cards
Entrez_Gene (NCBI)C1orf123  54987  chromosome 1 open reading frame 123
Aliases
GeneCards (Weizmann)C1orf123
Ensembl hg19 (Hinxton)ENSG00000162384 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162384 [Gene_View]  chr1:53214100-53220639 [Contig_View]  C1orf123 [Vega]
ICGC DataPortalENSG00000162384
TCGA cBioPortalC1orf123
AceView (NCBI)C1orf123
Genatlas (Paris)C1orf123
WikiGenes54987
SOURCE (Princeton)C1orf123
Genetics Home Reference (NIH)C1orf123
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf123  -     chr1:53214100-53220639 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf123  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblC1orf123 - 1p32.3 [CytoView hg19]  C1orf123 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf123 [Mapview hg19]  C1orf123 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000587 AK092734 AK094371 BC010908 BE889129
RefSeq transcript (Entrez)NM_001304759 NM_001304760 NM_017887
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf123
Cluster EST : UnigeneHs.525391 [ NCBI ]
CGAP (NCI)Hs.525391
Alternative Splicing GalleryENSG00000162384
Gene ExpressionC1orf123 [ NCBI-GEO ]   C1orf123 [ EBI - ARRAY_EXPRESS ]   C1orf123 [ SEEK ]   C1orf123 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf123 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54987
GTEX Portal (Tissue expression)C1orf123
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWV4
Splice isoforms : SwissVarQ9NWV4
PhosPhoSitePlusQ9NWV4
Domains : Interpro (EBI)DUF866_euk   
Domain families : Pfam (Sanger)DUF866 (PF05907)   
Domain families : Pfam (NCBI)pfam05907   
Conserved Domain (NCBI)C1orf123
DMDM Disease mutations54987
Blocks (Seattle)C1orf123
SuperfamilyQ9NWV4
Human Protein AtlasENSG00000162384
Peptide AtlasQ9NWV4
HPRD07929
IPIIPI00016605   IPI00514522   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWV4
IntAct (EBI)Q9NWV4
FunCoupENSG00000162384
BioGRIDC1orf123
STRING (EMBL)C1orf123
ZODIACC1orf123
Ontologies - Pathways
QuickGOQ9NWV4
Ontology : AmiGOmolecular_function  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  extracellular exosome  
NDEx NetworkC1orf123
Atlas of Cancer Signalling NetworkC1orf123
Wikipedia pathwaysC1orf123
Orthology - Evolution
OrthoDB54987
GeneTree (enSembl)ENSG00000162384
Phylogenetic Trees/Animal Genes : TreeFamC1orf123
HOVERGENQ9NWV4
HOGENOMQ9NWV4
Homologs : HomoloGeneC1orf123
Homology/Alignments : Family Browser (UCSC)C1orf123
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf123 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf123
dbVarC1orf123
ClinVarC1orf123
1000_GenomesC1orf123 
Exome Variant ServerC1orf123
ExAC (Exome Aggregation Consortium)C1orf123 (select the gene name)
Genetic variants : HAPMAP54987
Genomic Variants (DGV)C1orf123 [DGVbeta]
DECIPHERC1orf123 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf123 
Mutations
ICGC Data PortalC1orf123 
TCGA Data PortalC1orf123 
Broad Tumor PortalC1orf123
OASIS PortalC1orf123 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf123  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf123
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf123
DgiDB (Drug Gene Interaction Database)C1orf123
DoCM (Curated mutations)C1orf123 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf123 (select a term)
intoGenC1orf123
Cancer3DC1orf123(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf123
Genetic Testing Registry C1orf123
NextProtQ9NWV4 [Medical]
TSGene54987
GENETestsC1orf123
Huge Navigator C1orf123 [HugePedia]
snp3D : Map Gene to Disease54987
BioCentury BCIQC1orf123
ClinGenC1orf123
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54987
Chemical/Pharm GKB GenePA142672441
Clinical trialC1orf123
Miscellaneous
canSAR (ICR)C1orf123 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf123
EVEXC1orf123
GoPubMedC1orf123
iHOPC1orf123
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:03:00 CEST 2017

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