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C1orf127 (chromosome 1 open reading frame 127)

Identity

Alias_symbol (synonym)FLJ37118
Other alias-
HGNC (Hugo) C1orf127
LocusID (NCBI) 148345
Atlas_Id 61054
Location 1p36.22  [Link to chromosome band 1p36]
Location_base_pair Starts at 10946473 and ends at 10982037 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf127   26730
Cards
Entrez_Gene (NCBI)C1orf127  148345  chromosome 1 open reading frame 127
Aliases
GeneCards (Weizmann)C1orf127
Ensembl hg19 (Hinxton)ENSG00000175262 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175262 [Gene_View]  chr1:10946473-10982037 [Contig_View]  C1orf127 [Vega]
ICGC DataPortalENSG00000175262
TCGA cBioPortalC1orf127
AceView (NCBI)C1orf127
Genatlas (Paris)C1orf127
WikiGenes148345
SOURCE (Princeton)C1orf127
Genetics Home Reference (NIH)C1orf127
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf127  -     chr1:10946473-10982037 -  1p36.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf127  -     1p36.22   [Description]    (hg19-Feb_2009)
EnsemblC1orf127 - 1p36.22 [CytoView hg19]  C1orf127 - 1p36.22 [CytoView hg38]
Mapping of homologs : NCBIC1orf127 [Mapview hg19]  C1orf127 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094437 AK095152 BC126349 BC143794 BC143795
RefSeq transcript (Entrez)NM_001170754 NM_173507
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf127
Cluster EST : UnigeneHs.127026 [ NCBI ]
CGAP (NCI)Hs.127026
Alternative Splicing GalleryENSG00000175262
Gene ExpressionC1orf127 [ NCBI-GEO ]   C1orf127 [ EBI - ARRAY_EXPRESS ]   C1orf127 [ SEEK ]   C1orf127 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf127 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148345
GTEX Portal (Tissue expression)C1orf127
Human Protein AtlasENSG00000175262-C1orf127 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9H9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9H9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9H9
Splice isoforms : SwissVarQ8N9H9
PhosPhoSitePlusQ8N9H9
Domains : Interpro (EBI)DUF4556   
Domain families : Pfam (Sanger)DUF4556 (PF15094)   
Domain families : Pfam (NCBI)pfam15094   
Conserved Domain (NCBI)C1orf127
DMDM Disease mutations148345
Blocks (Seattle)C1orf127
SuperfamilyQ8N9H9
Human Protein Atlas [tissue]ENSG00000175262-C1orf127 [tissue]
Peptide AtlasQ8N9H9
HPRD08780
IPIIPI00745794   IPI00844343   IPI00980027   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9H9
IntAct (EBI)Q8N9H9
FunCoupENSG00000175262
BioGRIDC1orf127
STRING (EMBL)C1orf127
ZODIACC1orf127
Ontologies - Pathways
QuickGOQ8N9H9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf127
Atlas of Cancer Signalling NetworkC1orf127
Wikipedia pathwaysC1orf127
Orthology - Evolution
OrthoDB148345
GeneTree (enSembl)ENSG00000175262
Phylogenetic Trees/Animal Genes : TreeFamC1orf127
HOVERGENQ8N9H9
HOGENOMQ8N9H9
Homologs : HomoloGeneC1orf127
Homology/Alignments : Family Browser (UCSC)C1orf127
Gene fusions - Rearrangements
Tumor Fusion PortalC1orf127
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf127 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf127
dbVarC1orf127
ClinVarC1orf127
1000_GenomesC1orf127 
Exome Variant ServerC1orf127
ExAC (Exome Aggregation Consortium)ENSG00000175262
GNOMAD BrowserENSG00000175262
Genetic variants : HAPMAP148345
Genomic Variants (DGV)C1orf127 [DGVbeta]
DECIPHERC1orf127 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf127 
Mutations
ICGC Data PortalC1orf127 
TCGA Data PortalC1orf127 
Broad Tumor PortalC1orf127
OASIS PortalC1orf127 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf127  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf127
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf127
DgiDB (Drug Gene Interaction Database)C1orf127
DoCM (Curated mutations)C1orf127 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf127 (select a term)
intoGenC1orf127
Cancer3DC1orf127(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC1orf127
MedgenC1orf127
Genetic Testing Registry C1orf127
NextProtQ8N9H9 [Medical]
TSGene148345
GENETestsC1orf127
Target ValidationC1orf127
Huge Navigator C1orf127 [HugePedia]
snp3D : Map Gene to Disease148345
BioCentury BCIQC1orf127
ClinGenC1orf127
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148345
Chemical/Pharm GKB GenePA142672445
Clinical trialC1orf127
Miscellaneous
canSAR (ICR)C1orf127 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf127
EVEXC1orf127
GoPubMedC1orf127
iHOPC1orf127
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 12:59:24 CET 2017

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