Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf131 (chromosome 1 open reading frame 131)

Identity

Alias_symbol (synonym)DKFZp547B1713
Other alias-
HGNC (Hugo) C1orf131
LocusID (NCBI) 128061
Atlas_Id 61055
Location 1q42.2  [Link to chromosome band 1q42]
Location_base_pair Starts at 231223763 and ends at 231241187 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf131   25332
Cards
Entrez_Gene (NCBI)C1orf131  128061  chromosome 1 open reading frame 131
Aliases
GeneCards (Weizmann)C1orf131
Ensembl hg19 (Hinxton)ENSG00000143633 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143633 [Gene_View]  chr1:231223763-231241187 [Contig_View]  C1orf131 [Vega]
ICGC DataPortalENSG00000143633
TCGA cBioPortalC1orf131
AceView (NCBI)C1orf131
Genatlas (Paris)C1orf131
WikiGenes128061
SOURCE (Princeton)C1orf131
Genetics Home Reference (NIH)C1orf131
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf131  -     chr1:231223763-231241187 -  1q42.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf131  -     1q42.2   [Description]    (hg19-Feb_2009)
EnsemblC1orf131 - 1q42.2 [CytoView hg19]  C1orf131 - 1q42.2 [CytoView hg38]
Mapping of homologs : NCBIC1orf131 [Mapview hg19]  C1orf131 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055124 AK303359 AL834274 AY358235 BC036800
RefSeq transcript (Entrez)NM_001300830 NM_152379
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf131
Cluster EST : UnigeneHs.743464 [ NCBI ]
CGAP (NCI)Hs.743464
Alternative Splicing GalleryENSG00000143633
Gene ExpressionC1orf131 [ NCBI-GEO ]   C1orf131 [ EBI - ARRAY_EXPRESS ]   C1orf131 [ SEEK ]   C1orf131 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf131 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128061
GTEX Portal (Tissue expression)C1orf131
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDD1
Splice isoforms : SwissVarQ8NDD1
PhosPhoSitePlusQ8NDD1
Domains : Interpro (EBI)DUF4602   
Domain families : Pfam (Sanger)DUF4602 (PF15375)   
Domain families : Pfam (NCBI)pfam15375   
Conserved Domain (NCBI)C1orf131
DMDM Disease mutations128061
Blocks (Seattle)C1orf131
SuperfamilyQ8NDD1
Human Protein AtlasENSG00000143633
Peptide AtlasQ8NDD1
HPRD13204
IPIIPI00845227   IPI00470641   IPI00646945   IPI00845239   IPI00513772   IPI00432693   IPI00641845   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDD1
IntAct (EBI)Q8NDD1
FunCoupENSG00000143633
BioGRIDC1orf131
STRING (EMBL)C1orf131
ZODIACC1orf131
Ontologies - Pathways
QuickGOQ8NDD1
Ontology : AmiGORNA binding  chromosome  
Ontology : EGO-EBIRNA binding  chromosome  
NDEx NetworkC1orf131
Atlas of Cancer Signalling NetworkC1orf131
Wikipedia pathwaysC1orf131
Orthology - Evolution
OrthoDB128061
GeneTree (enSembl)ENSG00000143633
Phylogenetic Trees/Animal Genes : TreeFamC1orf131
HOVERGENQ8NDD1
HOGENOMQ8NDD1
Homologs : HomoloGeneC1orf131
Homology/Alignments : Family Browser (UCSC)C1orf131
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf131 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf131
dbVarC1orf131
ClinVarC1orf131
1000_GenomesC1orf131 
Exome Variant ServerC1orf131
ExAC (Exome Aggregation Consortium)C1orf131 (select the gene name)
Genetic variants : HAPMAP128061
Genomic Variants (DGV)C1orf131 [DGVbeta]
DECIPHERC1orf131 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf131 
Mutations
ICGC Data PortalC1orf131 
TCGA Data PortalC1orf131 
Broad Tumor PortalC1orf131
OASIS PortalC1orf131 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf131  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf131
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf131
DgiDB (Drug Gene Interaction Database)C1orf131
DoCM (Curated mutations)C1orf131 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf131 (select a term)
intoGenC1orf131
Cancer3DC1orf131(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf131
Genetic Testing Registry C1orf131
NextProtQ8NDD1 [Medical]
TSGene128061
GENETestsC1orf131
Target ValidationC1orf131
Huge Navigator C1orf131 [HugePedia]
snp3D : Map Gene to Disease128061
BioCentury BCIQC1orf131
ClinGenC1orf131
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128061
Chemical/Pharm GKB GenePA142672449
Clinical trialC1orf131
Miscellaneous
canSAR (ICR)C1orf131 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf131
EVEXC1orf131
GoPubMedC1orf131
iHOPC1orf131
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:48 CEST 2017

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