Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf140 (uncharacterized LOC400804)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 400804
Atlas_Id 61058
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 221329928 and ends at 221336296 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)C1orf140  400804  uncharacterized LOC400804
Aliases
GeneCards (Weizmann)C1orf140
Ensembl hg19 (Hinxton)ENSG00000234754 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234754 [Gene_View]  chr1:221329928-221336296 [Contig_View]  C1orf140 [Vega]
ICGC DataPortalENSG00000234754
TCGA cBioPortalC1orf140
AceView (NCBI)C1orf140
Genatlas (Paris)C1orf140
WikiGenes400804
SOURCE (Princeton)C1orf140
Genetics Home Reference (NIH)C1orf140
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf140  -     chr1:221329928-221336296 -  1q41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf140  -     1q41   [Description]    (hg19-Feb_2009)
EnsemblC1orf140 - 1q41 [CytoView hg19]  C1orf140 - 1q41 [CytoView hg38]
Mapping of homologs : NCBIC1orf140 [Mapview hg19]  C1orf140 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128488 BC140931
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf140
Cluster EST : UnigeneHs.722626 [ NCBI ]
CGAP (NCI)Hs.722626
Alternative Splicing GalleryENSG00000234754
Gene ExpressionC1orf140 [ NCBI-GEO ]   C1orf140 [ EBI - ARRAY_EXPRESS ]   C1orf140 [ SEEK ]   C1orf140 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf140 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400804
GTEX Portal (Tissue expression)C1orf140
Human Protein AtlasENSG00000234754-C1orf140 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VVS0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VVS0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VVS0
Splice isoforms : SwissVarQ5VVS0
PhosPhoSitePlusQ5VVS0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf140
DMDM Disease mutations400804
Blocks (Seattle)C1orf140
SuperfamilyQ5VVS0
Human Protein Atlas [tissue]ENSG00000234754-C1orf140 [tissue]
Peptide AtlasQ5VVS0
HPRD17386
IPIIPI00418725   
Protein Interaction databases
DIP (DOE-UCLA)Q5VVS0
IntAct (EBI)Q5VVS0
FunCoupENSG00000234754
BioGRIDC1orf140
STRING (EMBL)C1orf140
ZODIACC1orf140
Ontologies - Pathways
QuickGOQ5VVS0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf140
Atlas of Cancer Signalling NetworkC1orf140
Wikipedia pathwaysC1orf140
Orthology - Evolution
OrthoDB400804
GeneTree (enSembl)ENSG00000234754
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ5VVS0
HOGENOMQ5VVS0
Homologs : HomoloGeneC1orf140
Homology/Alignments : Family Browser (UCSC)C1orf140
Gene fusions - Rearrangements
Fusion: Tumor Portal C1orf140
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf140 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf140
dbVarC1orf140
ClinVarC1orf140
1000_GenomesC1orf140 
Exome Variant ServerC1orf140
ExAC (Exome Aggregation Consortium)ENSG00000234754
GNOMAD BrowserENSG00000234754
Genetic variants : HAPMAP400804
Genomic Variants (DGV)C1orf140 [DGVbeta]
DECIPHERC1orf140 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf140 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch C1orf140
DgiDB (Drug Gene Interaction Database)C1orf140
DoCM (Curated mutations)C1orf140 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf140 (select a term)
intoGenC1orf140
Cancer3DC1orf140(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf140
Genetic Testing Registry C1orf140
NextProtQ5VVS0 [Medical]
TSGene400804
GENETestsC1orf140
Target ValidationC1orf140
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease400804
BioCentury BCIQC1orf140
ClinGenC1orf140
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400804
Clinical trialC1orf140
Miscellaneous
canSAR (ICR)C1orf140 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf140
EVEXC1orf140
GoPubMedC1orf140
iHOPC1orf140
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:40:07 CET 2017

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