Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C1orf141 (chromosome 1 open reading frame 141)

Identity

Other alias-
HGNC (Hugo) C1orf141
LocusID (NCBI) 400757
Atlas_Id 61059
Location 1p31.3  [Link to chromosome band 1p31]
Location_base_pair Starts at 67092176 and ends at 67134971 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf141   32044
Cards
Entrez_Gene (NCBI)C1orf141  400757  chromosome 1 open reading frame 141
Aliases
GeneCards (Weizmann)C1orf141
Ensembl hg19 (Hinxton)ENSG00000203963 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203963 [Gene_View]  chr1:67092176-67134971 [Contig_View]  C1orf141 [Vega]
ICGC DataPortalENSG00000203963
TCGA cBioPortalC1orf141
AceView (NCBI)C1orf141
Genatlas (Paris)C1orf141
WikiGenes400757
SOURCE (Princeton)C1orf141
Genetics Home Reference (NIH)C1orf141
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf141  -     chr1:67092176-67134971 -  1p31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf141  -     1p31.3   [Description]    (hg19-Feb_2009)
EnsemblC1orf141 - 1p31.3 [CytoView hg19]  C1orf141 - 1p31.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf141 [Mapview hg19]  C1orf141 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC047053 BC062728 BC090886 BG772061
RefSeq transcript (Entrez)NM_001013674 NM_001276351 NM_001276352
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf141
Cluster EST : UnigeneHs.666621 [ NCBI ]
CGAP (NCI)Hs.666621
Alternative Splicing GalleryENSG00000203963
Gene ExpressionC1orf141 [ NCBI-GEO ]   C1orf141 [ EBI - ARRAY_EXPRESS ]   C1orf141 [ SEEK ]   C1orf141 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf141 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400757
GTEX Portal (Tissue expression)C1orf141
Human Protein AtlasENSG00000203963-C1orf141 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JVX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JVX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JVX7
Splice isoforms : SwissVarQ5JVX7
PhosPhoSitePlusQ5JVX7
Domains : Interpro (EBI)DUF4545   
Domain families : Pfam (Sanger)DUF4545 (PF15078)   
Domain families : Pfam (NCBI)pfam15078   
Conserved Domain (NCBI)C1orf141
DMDM Disease mutations400757
Blocks (Seattle)C1orf141
SuperfamilyQ5JVX7
Human Protein Atlas [tissue]ENSG00000203963-C1orf141 [tissue]
Peptide AtlasQ5JVX7
HPRD18418
IPIIPI00174978   IPI00640213   IPI00980071   IPI00640901   
Protein Interaction databases
DIP (DOE-UCLA)Q5JVX7
IntAct (EBI)Q5JVX7
FunCoupENSG00000203963
BioGRIDC1orf141
STRING (EMBL)C1orf141
ZODIACC1orf141
Ontologies - Pathways
QuickGOQ5JVX7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf141
Atlas of Cancer Signalling NetworkC1orf141
Wikipedia pathwaysC1orf141
Orthology - Evolution
OrthoDB400757
GeneTree (enSembl)ENSG00000203963
Phylogenetic Trees/Animal Genes : TreeFamC1orf141
HOVERGENQ5JVX7
HOGENOMQ5JVX7
Homologs : HomoloGeneC1orf141
Homology/Alignments : Family Browser (UCSC)C1orf141
Gene fusions - Rearrangements
Fusion: Tumor Portal C1orf141
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf141 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf141
dbVarC1orf141
ClinVarC1orf141
1000_GenomesC1orf141 
Exome Variant ServerC1orf141
ExAC (Exome Aggregation Consortium)ENSG00000203963
GNOMAD BrowserENSG00000203963
Genetic variants : HAPMAP400757
Genomic Variants (DGV)C1orf141 [DGVbeta]
DECIPHERC1orf141 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf141 
Mutations
ICGC Data PortalC1orf141 
TCGA Data PortalC1orf141 
Broad Tumor PortalC1orf141
OASIS PortalC1orf141 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf141  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf141
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf141
DgiDB (Drug Gene Interaction Database)C1orf141
DoCM (Curated mutations)C1orf141 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf141 (select a term)
intoGenC1orf141
Cancer3DC1orf141(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf141
Genetic Testing Registry C1orf141
NextProtQ5JVX7 [Medical]
TSGene400757
GENETestsC1orf141
Target ValidationC1orf141
Huge Navigator C1orf141 [HugePedia]
snp3D : Map Gene to Disease400757
BioCentury BCIQC1orf141
ClinGenC1orf141
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400757
Chemical/Pharm GKB GenePA142672459
Clinical trialC1orf141
Miscellaneous
canSAR (ICR)C1orf141 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf141
EVEXC1orf141
GoPubMedC1orf141
iHOPC1orf141
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:40:07 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.