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C1orf146 (chromosome 1 open reading frame 146)

Identity

Other alias-
HGNC (Hugo) C1orf146
LocusID (NCBI) 388649
Atlas_Id 61061
Location 1p22.1  [Link to chromosome band 1p22]
Location_base_pair Starts at 92218016 and ends at 92245810 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C1orf146 (1p22.1) / TAF8 (6p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf146   24032
Cards
Entrez_Gene (NCBI)C1orf146  388649  chromosome 1 open reading frame 146
Aliases
GeneCards (Weizmann)C1orf146
Ensembl hg19 (Hinxton)ENSG00000203910 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203910 [Gene_View]  chr1:92218016-92245810 [Contig_View]  C1orf146 [Vega]
ICGC DataPortalENSG00000203910
TCGA cBioPortalC1orf146
AceView (NCBI)C1orf146
Genatlas (Paris)C1orf146
WikiGenes388649
SOURCE (Princeton)C1orf146
Genetics Home Reference (NIH)C1orf146
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf146  -     chr1:92218016-92245810 +  1p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf146  -     1p22.1   [Description]    (hg19-Feb_2009)
EnsemblC1orf146 - 1p22.1 [CytoView hg19]  C1orf146 - 1p22.1 [CytoView hg38]
Mapping of homologs : NCBIC1orf146 [Mapview hg19]  C1orf146 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA861282 BC130499 BC171742 BQ435566 BQ435801
RefSeq transcript (Entrez)NM_001012425
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf146
Cluster EST : UnigeneHs.558823 [ NCBI ]
CGAP (NCI)Hs.558823
Alternative Splicing GalleryENSG00000203910
Gene ExpressionC1orf146 [ NCBI-GEO ]   C1orf146 [ EBI - ARRAY_EXPRESS ]   C1orf146 [ SEEK ]   C1orf146 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf146 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388649
GTEX Portal (Tissue expression)C1orf146
Human Protein AtlasENSG00000203910-C1orf146 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VVC0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VVC0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VVC0
Splice isoforms : SwissVarQ5VVC0
PhosPhoSitePlusQ5VVC0
Domains : Interpro (EBI)DUF4580   
Domain families : Pfam (Sanger)DUF4580 (PF15162)   
Domain families : Pfam (NCBI)pfam15162   
Conserved Domain (NCBI)C1orf146
DMDM Disease mutations388649
Blocks (Seattle)C1orf146
SuperfamilyQ5VVC0
Human Protein Atlas [tissue]ENSG00000203910-C1orf146 [tissue]
Peptide AtlasQ5VVC0
HPRD17988
IPIIPI00397772   IPI00641193   
Protein Interaction databases
DIP (DOE-UCLA)Q5VVC0
IntAct (EBI)Q5VVC0
FunCoupENSG00000203910
BioGRIDC1orf146
STRING (EMBL)C1orf146
ZODIACC1orf146
Ontologies - Pathways
QuickGOQ5VVC0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf146
Atlas of Cancer Signalling NetworkC1orf146
Wikipedia pathwaysC1orf146
Orthology - Evolution
OrthoDB388649
GeneTree (enSembl)ENSG00000203910
Phylogenetic Trees/Animal Genes : TreeFamC1orf146
HOVERGENQ5VVC0
HOGENOMQ5VVC0
Homologs : HomoloGeneC1orf146
Homology/Alignments : Family Browser (UCSC)C1orf146
Gene fusions - Rearrangements
Tumor Fusion PortalC1orf146
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf146 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf146
dbVarC1orf146
ClinVarC1orf146
1000_GenomesC1orf146 
Exome Variant ServerC1orf146
ExAC (Exome Aggregation Consortium)ENSG00000203910
GNOMAD BrowserENSG00000203910
Genetic variants : HAPMAP388649
Genomic Variants (DGV)C1orf146 [DGVbeta]
DECIPHERC1orf146 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf146 
Mutations
ICGC Data PortalC1orf146 
TCGA Data PortalC1orf146 
Broad Tumor PortalC1orf146
OASIS PortalC1orf146 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf146  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf146
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf146
DgiDB (Drug Gene Interaction Database)C1orf146
DoCM (Curated mutations)C1orf146 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf146 (select a term)
intoGenC1orf146
Cancer3DC1orf146(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC1orf146
MedgenC1orf146
Genetic Testing Registry C1orf146
NextProtQ5VVC0 [Medical]
TSGene388649
GENETestsC1orf146
Target ValidationC1orf146
Huge Navigator C1orf146 [HugePedia]
snp3D : Map Gene to Disease388649
BioCentury BCIQC1orf146
ClinGenC1orf146
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388649
Chemical/Pharm GKB GenePA142672463
Clinical trialC1orf146
Miscellaneous
canSAR (ICR)C1orf146 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf146
EVEXC1orf146
GoPubMedC1orf146
iHOPC1orf146
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 12:59:26 CET 2017

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