Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf158 (chromosome 1 open reading frame 158)

Identity

Alias_symbol (synonym)MGC35194
Other alias-
HGNC (Hugo) C1orf158
LocusID (NCBI) 93190
Atlas_Id 61063
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 12746186 and ends at 12761169 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf158   28567
Cards
Entrez_Gene (NCBI)C1orf158  93190  chromosome 1 open reading frame 158
Aliases
GeneCards (Weizmann)C1orf158
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:12746186-12761169 [Contig_View]  C1orf158 [Vega]
TCGA cBioPortalC1orf158
AceView (NCBI)C1orf158
Genatlas (Paris)C1orf158
WikiGenes93190
SOURCE (Princeton)C1orf158
Genetics Home Reference (NIH)C1orf158
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf158  -     chr1:12746186-12761169 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf158  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblC1orf158 - 1p36.21 [CytoView hg19]  C1orf158 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIC1orf158 [Mapview hg19]  C1orf158 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026705 AK298760 BC029894 BX647383 HQ447108
RefSeq transcript (Entrez)NM_001330361 NM_152290
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf158
Cluster EST : UnigeneHs.98095 [ NCBI ]
CGAP (NCI)Hs.98095
Gene ExpressionC1orf158 [ NCBI-GEO ]   C1orf158 [ EBI - ARRAY_EXPRESS ]   C1orf158 [ SEEK ]   C1orf158 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf158 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93190
GTEX Portal (Tissue expression)C1orf158
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1D5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1D5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1D5
Splice isoforms : SwissVarQ8N1D5
PhosPhoSitePlusQ8N1D5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf158
DMDM Disease mutations93190
Blocks (Seattle)C1orf158
SuperfamilyQ8N1D5
Peptide AtlasQ8N1D5
HPRD14604
IPIIPI00166141   IPI00478416   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1D5
IntAct (EBI)Q8N1D5
BioGRIDC1orf158
STRING (EMBL)C1orf158
ZODIACC1orf158
Ontologies - Pathways
QuickGOQ8N1D5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf158
Atlas of Cancer Signalling NetworkC1orf158
Wikipedia pathwaysC1orf158
Orthology - Evolution
OrthoDB93190
Phylogenetic Trees/Animal Genes : TreeFamC1orf158
HOVERGENQ8N1D5
HOGENOMQ8N1D5
Homologs : HomoloGeneC1orf158
Homology/Alignments : Family Browser (UCSC)C1orf158
Gene fusions - Rearrangements
Fusion: Tumor Portal C1orf158
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf158 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf158
dbVarC1orf158
ClinVarC1orf158
1000_GenomesC1orf158 
Exome Variant ServerC1orf158
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP93190
Genomic Variants (DGV)C1orf158 [DGVbeta]
DECIPHERC1orf158 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf158 
Mutations
ICGC Data PortalC1orf158 
TCGA Data PortalC1orf158 
Broad Tumor PortalC1orf158
OASIS PortalC1orf158 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf158  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf158
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf158
DgiDB (Drug Gene Interaction Database)C1orf158
DoCM (Curated mutations)C1orf158 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf158 (select a term)
intoGenC1orf158
Cancer3DC1orf158(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf158
Genetic Testing Registry C1orf158
NextProtQ8N1D5 [Medical]
TSGene93190
GENETestsC1orf158
Target ValidationC1orf158
Huge Navigator C1orf158 [HugePedia]
snp3D : Map Gene to Disease93190
BioCentury BCIQC1orf158
ClinGenC1orf158
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93190
Chemical/Pharm GKB GenePA142672409
Clinical trialC1orf158
Miscellaneous
canSAR (ICR)C1orf158 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf158
EVEXC1orf158
GoPubMedC1orf158
iHOPC1orf158
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:40:08 CET 2017

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