Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf159 (chromosome 1 open reading frame 159)

Identity

HGNC (Hugo) C1orf159
LocusID (NCBI) 54991
Atlas_Id 40602
Location 1p36.33
Location_base_pair Starts at 1017198 and ends at 1051736 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
C1orf159 1p36.33 / SDF4 1p36.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf159   26062
Cards
Entrez_Gene (NCBI)C1orf159  54991  chromosome 1 open reading frame 159
GeneCards (Weizmann)C1orf159
Ensembl hg19 (Hinxton)ENSG00000131591 [Gene_View]  chr1:1017198-1051736 [Contig_View]  C1orf159 [Vega]
Ensembl hg38 (Hinxton)ENSG00000131591 [Gene_View]  chr1:1017198-1051736 [Contig_View]  C1orf159 [Vega]
ICGC DataPortalENSG00000131591
TCGA cBioPortalC1orf159
AceView (NCBI)C1orf159
Genatlas (Paris)C1orf159
WikiGenes54991
SOURCE (Princeton)C1orf159
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf159  -     chr1:1017198-1051736 -  1p36.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf159  -     1p36.33   [Description]    (hg38-Dec_2013)
EnsemblC1orf159 - 1p36.33 [CytoView hg19]  C1orf159 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIC1orf159 [Mapview hg19]  C1orf159 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI270164 AK000591 AK024796 AK054793 AK057368
RefSeq transcript (Entrez)NM_017891
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929288
Consensus coding sequences : CCDS (NCBI)C1orf159
Cluster EST : UnigeneHs.235095 [ NCBI ]
CGAP (NCI)Hs.235095
Alternative Splicing : Fast-db (Paris)GSHG0001648
Alternative Splicing GalleryENSG00000131591
Gene ExpressionC1orf159 [ NCBI-GEO ]     C1orf159 [ SEEK ]   C1orf159 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)54991
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HA4 (Uniprot)
NextProtQ96HA4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HA4
Splice isoforms : SwissVarQ96HA4 (Swissvar)
PhosPhoSitePlusQ96HA4
Domains : Interpro (EBI)DUF4501   
Domain families : Pfam (Sanger)DUF4501 (PF14946)   
Domain families : Pfam (NCBI)pfam14946   
DMDM Disease mutations54991
Blocks (Seattle)C1orf159
Human Protein AtlasENSG00000131591
Peptide AtlasQ96HA4
HPRD07930
IPIIPI00515131   IPI00062955   IPI00514936   IPI00016627   IPI00909677   IPI00871670   IPI00916675   IPI00446467   IPI00883596   
Protein Interaction databases
DIP (DOE-UCLA)Q96HA4
IntAct (EBI)Q96HA4
FunCoupENSG00000131591
BioGRIDC1orf159
IntegromeDBC1orf159
STRING (EMBL)C1orf159
ZODIACC1orf159
Ontologies - Pathways
QuickGOQ96HA4
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
Protein Interaction DatabaseC1orf159
Atlas of Cancer Signalling NetworkC1orf159
Wikipedia pathwaysC1orf159
Orthology - Evolution
OrthoDB54991
GeneTree (enSembl)ENSG00000131591
Phylogenetic Trees/Animal Genes : TreeFamC1orf159
Homologs : HomoloGeneC1orf159
Homology/Alignments : Family Browser (UCSC)C1orf159
Gene fusions - Rearrangements
Fusion: TCGAC1orf159 1p36.33 SDF4 1p36.33 LUAD
Polymorphisms : SNP, variants
NCBI Variation ViewerC1orf159 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf159
dbVarC1orf159
ClinVarC1orf159
1000_GenomesC1orf159 
Exome Variant ServerC1orf159
Exome Aggregation Consortium (ExAC)ENSG00000131591
SNP (GeneSNP Utah)C1orf159
SNP : HGBaseC1orf159
Genetic variants : HAPMAPC1orf159
Genomic Variants (DGV)C1orf159 [DGVbeta]
Mutations
ICGC Data PortalC1orf159 
TCGA Data PortalC1orf159 
Tumor PortalC1orf159
TCGA Copy Number PortalC1orf159
Somatic Mutations in Cancer : COSMICC1orf159 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf159
DgiDB (Drug Gene Interaction Database)C1orf159
DoCM (Curated mutations)C1orf159 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf159 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:1017198-1051736
CONAN: Copy Number AnalysisC1orf159 
Mutations and Diseases : HGMDC1orf159
OMIM
MedgenC1orf159
NextProtQ96HA4 [Medical]
TSGene54991
GENETestsC1orf159
Huge Navigator C1orf159 [HugePedia]  C1orf159 [HugeCancerGEM]
snp3D : Map Gene to Disease54991
BioCentury BCIQC1orf159
General knowledge
Chemical/Protein Interactions : CTD54991
Chemical/Pharm GKB GenePA142672410
Clinical trialC1orf159
Other databases
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf159
GoPubMedC1orf159
iHOPC1orf159
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 18:14:40 CET 2016

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