Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf162 (chromosome 1 open reading frame 162)

Identity

Alias_symbol (synonym)MGC24133
Other alias-
HGNC (Hugo) C1orf162
LocusID (NCBI) 128346
Atlas_Id 61064
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 111473869 and ends at 111478512 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf162   28344
Cards
Entrez_Gene (NCBI)C1orf162  128346  chromosome 1 open reading frame 162
Aliases
GeneCards (Weizmann)C1orf162
Ensembl hg19 (Hinxton)ENSG00000143110 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143110 [Gene_View]  chr1:111473869-111478512 [Contig_View]  C1orf162 [Vega]
ICGC DataPortalENSG00000143110
TCGA cBioPortalC1orf162
AceView (NCBI)C1orf162
Genatlas (Paris)C1orf162
WikiGenes128346
SOURCE (Princeton)C1orf162
Genetics Home Reference (NIH)C1orf162
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf162  -     chr1:111473869-111478512 +  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf162  -     1p13.2   [Description]    (hg19-Feb_2009)
EnsemblC1orf162 - 1p13.2 [CytoView hg19]  C1orf162 - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBIC1orf162 [Mapview hg19]  C1orf162 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA333542 AK123160 BC017973 BG545926 CA439311
RefSeq transcript (Entrez)NM_001300834 NM_001300835 NM_174896
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf162
Cluster EST : UnigeneHs.288010 [ NCBI ]
CGAP (NCI)Hs.288010
Alternative Splicing GalleryENSG00000143110
Gene ExpressionC1orf162 [ NCBI-GEO ]   C1orf162 [ EBI - ARRAY_EXPRESS ]   C1orf162 [ SEEK ]   C1orf162 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf162 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128346
GTEX Portal (Tissue expression)C1orf162
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEQ5
Splice isoforms : SwissVarQ8NEQ5
PhosPhoSitePlusQ8NEQ5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf162
DMDM Disease mutations128346
Blocks (Seattle)C1orf162
SuperfamilyQ8NEQ5
Human Protein AtlasENSG00000143110
Peptide AtlasQ8NEQ5
HPRD14495
IPIIPI00168713   IPI00386931   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEQ5
IntAct (EBI)Q8NEQ5
FunCoupENSG00000143110
BioGRIDC1orf162
STRING (EMBL)C1orf162
ZODIACC1orf162
Ontologies - Pathways
QuickGOQ8NEQ5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC1orf162
Atlas of Cancer Signalling NetworkC1orf162
Wikipedia pathwaysC1orf162
Orthology - Evolution
OrthoDB128346
GeneTree (enSembl)ENSG00000143110
Phylogenetic Trees/Animal Genes : TreeFamC1orf162
HOVERGENQ8NEQ5
HOGENOMQ8NEQ5
Homologs : HomoloGeneC1orf162
Homology/Alignments : Family Browser (UCSC)C1orf162
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf162 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf162
dbVarC1orf162
ClinVarC1orf162
1000_GenomesC1orf162 
Exome Variant ServerC1orf162
ExAC (Exome Aggregation Consortium)C1orf162 (select the gene name)
Genetic variants : HAPMAP128346
Genomic Variants (DGV)C1orf162 [DGVbeta]
DECIPHERC1orf162 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf162 
Mutations
ICGC Data PortalC1orf162 
TCGA Data PortalC1orf162 
Broad Tumor PortalC1orf162
OASIS PortalC1orf162 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf162  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf162
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf162
DgiDB (Drug Gene Interaction Database)C1orf162
DoCM (Curated mutations)C1orf162 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf162 (select a term)
intoGenC1orf162
Cancer3DC1orf162(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf162
Genetic Testing Registry C1orf162
NextProtQ8NEQ5 [Medical]
TSGene128346
GENETestsC1orf162
Target ValidationC1orf162
Huge Navigator C1orf162 [HugePedia]
snp3D : Map Gene to Disease128346
BioCentury BCIQC1orf162
ClinGenC1orf162
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128346
Chemical/Pharm GKB GenePA142672413
Clinical trialC1orf162
Miscellaneous
canSAR (ICR)C1orf162 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf162
EVEXC1orf162
GoPubMedC1orf162
iHOPC1orf162
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:03:03 CEST 2017

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