Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf167 (chromosome 1 open reading frame 167)

Identity

Alias_symbol (synonym)DKFZp434E1410
RP11-56N19.2
Other alias-
HGNC (Hugo) C1orf167
LocusID (NCBI) 284498
Atlas_Id 61065
Location 1p36.22  [Link to chromosome band 1p36]
Location_base_pair Starts at 11822250 and ends at 11849642 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C1orf167 (1p36.22) / C1orf167 (1p36.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf167   25262
Cards
Entrez_Gene (NCBI)C1orf167  284498  chromosome 1 open reading frame 167
Aliases
GeneCards (Weizmann)C1orf167
Ensembl hg19 (Hinxton) [Gene_View]  chr1:11822250-11849642 [Contig_View]  C1orf167 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:11822250-11849642 [Contig_View]  C1orf167 [Vega]
TCGA cBioPortalC1orf167
AceView (NCBI)C1orf167
Genatlas (Paris)C1orf167
WikiGenes284498
SOURCE (Princeton)C1orf167
Genetics Home Reference (NIH)C1orf167
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf167  -     chr1:11822250-11849642 +  1p36.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf167  -     1p36.22   [Description]    (hg38-Dec_2013)
EnsemblC1orf167 - 1p36.22 [CytoView hg19]  C1orf167 - 1p36.22 [CytoView hg38]
Mapping of homologs : NCBIC1orf167 [Mapview hg19]  C1orf167 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF398935 AL833920 AL833926 AL834308 BC031692
RefSeq transcript (Entrez)NM_001010881
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)C1orf167
Cluster EST : UnigeneHs.742886 [ NCBI ]
CGAP (NCI)Hs.742886
Gene ExpressionC1orf167 [ NCBI-GEO ]   C1orf167 [ EBI - ARRAY_EXPRESS ]   C1orf167 [ SEEK ]   C1orf167 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf167 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284498
GTEX Portal (Tissue expression)C1orf167
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SNV9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SNV9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SNV9
Splice isoforms : SwissVarQ5SNV9
PhosPhoSitePlusQ5SNV9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf167
DMDM Disease mutations284498
Blocks (Seattle)C1orf167
SuperfamilyQ5SNV9
Peptide AtlasQ5SNV9
IPIIPI00168525   IPI00867507   IPI00977289   IPI00935872   IPI00514391   
Protein Interaction databases
DIP (DOE-UCLA)Q5SNV9
IntAct (EBI)Q5SNV9
BioGRIDC1orf167
STRING (EMBL)C1orf167
ZODIACC1orf167
Ontologies - Pathways
QuickGOQ5SNV9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf167
Atlas of Cancer Signalling NetworkC1orf167
Wikipedia pathwaysC1orf167
Orthology - Evolution
OrthoDB284498
Phylogenetic Trees/Animal Genes : TreeFamC1orf167
HOVERGENQ5SNV9
HOGENOMQ5SNV9
Homologs : HomoloGeneC1orf167
Homology/Alignments : Family Browser (UCSC)C1orf167
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf167 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf167
dbVarC1orf167
ClinVarC1orf167
1000_GenomesC1orf167 
Exome Variant ServerC1orf167
ExAC (Exome Aggregation Consortium)C1orf167 (select the gene name)
Genetic variants : HAPMAP284498
Genomic Variants (DGV)C1orf167 [DGVbeta]
DECIPHER (Syndromes)1:11822250-11849642  
CONAN: Copy Number AnalysisC1orf167 
Mutations
ICGC Data PortalC1orf167 
TCGA Data PortalC1orf167 
Broad Tumor PortalC1orf167
OASIS PortalC1orf167 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf167  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf167
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf167
DgiDB (Drug Gene Interaction Database)C1orf167
DoCM (Curated mutations)C1orf167 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf167 (select a term)
intoGenC1orf167
Cancer3DC1orf167(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf167
Genetic Testing Registry C1orf167
NextProtQ5SNV9 [Medical]
TSGene284498
GENETestsC1orf167
Huge Navigator C1orf167 [HugePedia]
snp3D : Map Gene to Disease284498
BioCentury BCIQC1orf167
ClinGenC1orf167
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284498
Chemical/Pharm GKB GenePA142672417
Clinical trialC1orf167
Miscellaneous
canSAR (ICR)C1orf167 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf167
EVEXC1orf167
GoPubMedC1orf167
iHOPC1orf167
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:57 CET 2017

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