Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf168 (chromosome 1 open reading frame 168)

Identity

Alias_symbol (synonym)RP4-758N20.2
FLJ43208
Other alias-
HGNC (Hugo) C1orf168
LocusID (NCBI) 199920
Atlas_Id 61066
Location 1p32.2  [Link to chromosome band 1p32]
Location_base_pair Starts at 57184477 and ends at 57285369 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LRRC8D (1p22.2) / C1orf168 (1p32.2)NXF1 (11q12.3) / C1orf168 (1p32.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf168   27295
Cards
Entrez_Gene (NCBI)C1orf168  199920  chromosome 1 open reading frame 168
Aliases
GeneCards (Weizmann)C1orf168
Ensembl hg19 (Hinxton)ENSG00000187889 [Gene_View]  chr1:57184477-57285369 [Contig_View]  C1orf168 [Vega]
Ensembl hg38 (Hinxton)ENSG00000187889 [Gene_View]  chr1:57184477-57285369 [Contig_View]  C1orf168 [Vega]
ICGC DataPortalENSG00000187889
TCGA cBioPortalC1orf168
AceView (NCBI)C1orf168
Genatlas (Paris)C1orf168
WikiGenes199920
SOURCE (Princeton)C1orf168
Genetics Home Reference (NIH)C1orf168
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf168  -     chr1:57184477-57285369 -  1p32.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf168  -     1p32.2   [Description]    (hg38-Dec_2013)
EnsemblC1orf168 - 1p32.2 [CytoView hg19]  C1orf168 - 1p32.2 [CytoView hg38]
Mapping of homologs : NCBIC1orf168 [Mapview hg19]  C1orf168 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093468 AK125198 AK310842 BU686304 BX648439
RefSeq transcript (Entrez)NM_001004303
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)C1orf168
Cluster EST : UnigeneHs.437655 [ NCBI ]
CGAP (NCI)Hs.437655
Alternative Splicing GalleryENSG00000187889
Gene ExpressionC1orf168 [ NCBI-GEO ]   C1orf168 [ EBI - ARRAY_EXPRESS ]   C1orf168 [ SEEK ]   C1orf168 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf168 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)199920
GTEX Portal (Tissue expression)C1orf168
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWT5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWT5
Splice isoforms : SwissVarQ5VWT5
PhosPhoSitePlusQ5VWT5
Domains : Interpro (EBI)hSH3    SH3_domain   
Domain families : Pfam (Sanger)hSH3 (PF14603)   
Domain families : Pfam (NCBI)pfam14603   
Domain families : Smart (EMBL)SH3 (SM00326)  
Conserved Domain (NCBI)C1orf168
DMDM Disease mutations199920
Blocks (Seattle)C1orf168
SuperfamilyQ5VWT5
Human Protein AtlasENSG00000187889
Peptide AtlasQ5VWT5
HPRD14120
IPIIPI00464950   IPI00855995   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWT5
IntAct (EBI)Q5VWT5
FunCoupENSG00000187889
BioGRIDC1orf168
STRING (EMBL)C1orf168
ZODIACC1orf168
Ontologies - Pathways
QuickGOQ5VWT5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf168
Atlas of Cancer Signalling NetworkC1orf168
Wikipedia pathwaysC1orf168
Orthology - Evolution
OrthoDB199920
GeneTree (enSembl)ENSG00000187889
Phylogenetic Trees/Animal Genes : TreeFamC1orf168
HOVERGENQ5VWT5
HOGENOMQ5VWT5
Homologs : HomoloGeneC1orf168
Homology/Alignments : Family Browser (UCSC)C1orf168
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf168 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf168
dbVarC1orf168
ClinVarC1orf168
1000_GenomesC1orf168 
Exome Variant ServerC1orf168
ExAC (Exome Aggregation Consortium)C1orf168 (select the gene name)
Genetic variants : HAPMAP199920
Genomic Variants (DGV)C1orf168 [DGVbeta]
DECIPHER (Syndromes)1:57184477-57285369  ENSG00000187889
CONAN: Copy Number AnalysisC1orf168 
Mutations
ICGC Data PortalC1orf168 
TCGA Data PortalC1orf168 
Broad Tumor PortalC1orf168
OASIS PortalC1orf168 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf168  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf168
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf168
DgiDB (Drug Gene Interaction Database)C1orf168
DoCM (Curated mutations)C1orf168 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf168 (select a term)
intoGenC1orf168
Cancer3DC1orf168(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf168
Genetic Testing Registry C1orf168
NextProtQ5VWT5 [Medical]
TSGene199920
GENETestsC1orf168
Huge Navigator C1orf168 [HugePedia]
snp3D : Map Gene to Disease199920
BioCentury BCIQC1orf168
ClinGenC1orf168
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD199920
Chemical/Pharm GKB GenePA142672418
Clinical trialC1orf168
Miscellaneous
canSAR (ICR)C1orf168 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf168
EVEXC1orf168
GoPubMedC1orf168
iHOPC1orf168
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:57 CET 2017

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