Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf174 (chromosome 1 open reading frame 174)

Identity

Alias_symbol (synonym)RP13-531C17.2
Other alias-
HGNC (Hugo) C1orf174
LocusID (NCBI) 339448
Atlas_Id 61067
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 3889133 and ends at 3900293 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C1orf174 (1p36.32) / DNM1L (12p11.21)C1orf174 (1p36.32) / PPP1CB (2p23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf174   27915
Cards
Entrez_Gene (NCBI)C1orf174  339448  chromosome 1 open reading frame 174
Aliases
GeneCards (Weizmann)C1orf174
Ensembl hg19 (Hinxton)ENSG00000198912 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198912 [Gene_View]  chr1:3889133-3900293 [Contig_View]  C1orf174 [Vega]
ICGC DataPortalENSG00000198912
TCGA cBioPortalC1orf174
AceView (NCBI)C1orf174
Genatlas (Paris)C1orf174
WikiGenes339448
SOURCE (Princeton)C1orf174
Genetics Home Reference (NIH)C1orf174
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf174  -     chr1:3889133-3900293 -  1p36.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf174  -     1p36.32   [Description]    (hg19-Feb_2009)
EnsemblC1orf174 - 1p36.32 [CytoView hg19]  C1orf174 - 1p36.32 [CytoView hg38]
Mapping of homologs : NCBIC1orf174 [Mapview hg19]  C1orf174 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125092 AK289493 BC035643 BC047611 BC067302
RefSeq transcript (Entrez)NM_207356
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf174
Cluster EST : UnigeneHs.103939 [ NCBI ]
CGAP (NCI)Hs.103939
Alternative Splicing GalleryENSG00000198912
Gene ExpressionC1orf174 [ NCBI-GEO ]   C1orf174 [ EBI - ARRAY_EXPRESS ]   C1orf174 [ SEEK ]   C1orf174 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf174 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339448
GTEX Portal (Tissue expression)C1orf174
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYL3
Splice isoforms : SwissVarQ8IYL3
PhosPhoSitePlusQ8IYL3
Domains : Interpro (EBI)UPF0688   
Domain families : Pfam (Sanger)UPF0688 (PF15772)   
Domain families : Pfam (NCBI)pfam15772   
Conserved Domain (NCBI)C1orf174
DMDM Disease mutations339448
Blocks (Seattle)C1orf174
SuperfamilyQ8IYL3
Human Protein AtlasENSG00000198912
Peptide AtlasQ8IYL3
HPRD17353
IPIIPI00844507   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYL3
IntAct (EBI)Q8IYL3
FunCoupENSG00000198912
BioGRIDC1orf174
STRING (EMBL)C1orf174
ZODIACC1orf174
Ontologies - Pathways
QuickGOQ8IYL3
Ontology : AmiGOprotein binding  nucleus  
Ontology : EGO-EBIprotein binding  nucleus  
NDEx NetworkC1orf174
Atlas of Cancer Signalling NetworkC1orf174
Wikipedia pathwaysC1orf174
Orthology - Evolution
OrthoDB339448
GeneTree (enSembl)ENSG00000198912
Phylogenetic Trees/Animal Genes : TreeFamC1orf174
HOVERGENQ8IYL3
HOGENOMQ8IYL3
Homologs : HomoloGeneC1orf174
Homology/Alignments : Family Browser (UCSC)C1orf174
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf174 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf174
dbVarC1orf174
ClinVarC1orf174
1000_GenomesC1orf174 
Exome Variant ServerC1orf174
ExAC (Exome Aggregation Consortium)C1orf174 (select the gene name)
Genetic variants : HAPMAP339448
Genomic Variants (DGV)C1orf174 [DGVbeta]
DECIPHERC1orf174 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf174 
Mutations
ICGC Data PortalC1orf174 
TCGA Data PortalC1orf174 
Broad Tumor PortalC1orf174
OASIS PortalC1orf174 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf174  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf174
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf174
DgiDB (Drug Gene Interaction Database)C1orf174
DoCM (Curated mutations)C1orf174 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf174 (select a term)
intoGenC1orf174
Cancer3DC1orf174(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf174
Genetic Testing Registry C1orf174
NextProtQ8IYL3 [Medical]
TSGene339448
GENETestsC1orf174
Huge Navigator C1orf174 [HugePedia]
snp3D : Map Gene to Disease339448
BioCentury BCIQC1orf174
ClinGenC1orf174
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339448
Chemical/Pharm GKB GenePA143485318
Clinical trialC1orf174
Miscellaneous
canSAR (ICR)C1orf174 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf174
EVEXC1orf174
GoPubMedC1orf174
iHOPC1orf174
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:03:04 CEST 2017

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