Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf177 (chromosome 1 open reading frame 177)

Identity

Other alias-
HGNC (Hugo) C1orf177
LocusID (NCBI) 163747
Atlas_Id 61068
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 55271736 and ends at 55307937 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf177   26854
Cards
Entrez_Gene (NCBI)C1orf177  163747  chromosome 1 open reading frame 177
Aliases
GeneCards (Weizmann)C1orf177
Ensembl hg19 (Hinxton)ENSG00000162398 [Gene_View]  chr1:55271736-55307937 [Contig_View]  C1orf177 [Vega]
Ensembl hg38 (Hinxton)ENSG00000162398 [Gene_View]  chr1:55271736-55307937 [Contig_View]  C1orf177 [Vega]
ICGC DataPortalENSG00000162398
TCGA cBioPortalC1orf177
AceView (NCBI)C1orf177
Genatlas (Paris)C1orf177
WikiGenes163747
SOURCE (Princeton)C1orf177
Genetics Home Reference (NIH)C1orf177
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf177  -     chr1:55271736-55307937 +  1p32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf177  -     1p32.3   [Description]    (hg38-Dec_2013)
EnsemblC1orf177 - 1p32.3 [CytoView hg19]  C1orf177 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf177 [Mapview hg19]  C1orf177 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097520 BC039109 BC064142 BU633253
RefSeq transcript (Entrez)NM_001110533 NM_152607
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)C1orf177
Cluster EST : UnigeneHs.376018 [ NCBI ]
CGAP (NCI)Hs.376018
Alternative Splicing GalleryENSG00000162398
Gene ExpressionC1orf177 [ NCBI-GEO ]   C1orf177 [ EBI - ARRAY_EXPRESS ]   C1orf177 [ SEEK ]   C1orf177 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf177 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163747
GTEX Portal (Tissue expression)C1orf177
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3ZCV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3ZCV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3ZCV2
Splice isoforms : SwissVarQ3ZCV2
PhosPhoSitePlusQ3ZCV2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf177
DMDM Disease mutations163747
Blocks (Seattle)C1orf177
SuperfamilyQ3ZCV2
Human Protein AtlasENSG00000162398
Peptide AtlasQ3ZCV2
HPRD08807
IPIIPI00641366   IPI00167399   
Protein Interaction databases
DIP (DOE-UCLA)Q3ZCV2
IntAct (EBI)Q3ZCV2
FunCoupENSG00000162398
BioGRIDC1orf177
STRING (EMBL)C1orf177
ZODIACC1orf177
Ontologies - Pathways
QuickGOQ3ZCV2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf177
Atlas of Cancer Signalling NetworkC1orf177
Wikipedia pathwaysC1orf177
Orthology - Evolution
OrthoDB163747
GeneTree (enSembl)ENSG00000162398
Phylogenetic Trees/Animal Genes : TreeFamC1orf177
HOVERGENQ3ZCV2
HOGENOMQ3ZCV2
Homologs : HomoloGeneC1orf177
Homology/Alignments : Family Browser (UCSC)C1orf177
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf177 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf177
dbVarC1orf177
ClinVarC1orf177
1000_GenomesC1orf177 
Exome Variant ServerC1orf177
ExAC (Exome Aggregation Consortium)C1orf177 (select the gene name)
Genetic variants : HAPMAP163747
Genomic Variants (DGV)C1orf177 [DGVbeta]
DECIPHER (Syndromes)1:55271736-55307937  ENSG00000162398
CONAN: Copy Number AnalysisC1orf177 
Mutations
ICGC Data PortalC1orf177 
TCGA Data PortalC1orf177 
Broad Tumor PortalC1orf177
OASIS PortalC1orf177 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf177  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf177
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf177
DgiDB (Drug Gene Interaction Database)C1orf177
DoCM (Curated mutations)C1orf177 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf177 (select a term)
intoGenC1orf177
Cancer3DC1orf177(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf177
Genetic Testing Registry C1orf177
NextProtQ3ZCV2 [Medical]
TSGene163747
GENETestsC1orf177
Huge Navigator C1orf177 [HugePedia]
snp3D : Map Gene to Disease163747
BioCentury BCIQC1orf177
ClinGenC1orf177
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163747
Chemical/Pharm GKB GenePA142672425
Clinical trialC1orf177
Miscellaneous
canSAR (ICR)C1orf177 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf177
EVEXC1orf177
GoPubMedC1orf177
iHOPC1orf177
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:58 CET 2017

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