Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf185 (chromosome 1 open reading frame 185)

Identity

Alias_symbol (synonym)FLJ27485
Other alias-
HGNC (Hugo) C1orf185
LocusID (NCBI) 284546
Atlas_Id 61069
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 51102234 and ends at 51148082 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FECH (18q21.31) / C1orf185 (1p32.3)OSBPL9 (1p32.3) / C1orf185 (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf185   28096
Cards
Entrez_Gene (NCBI)C1orf185  284546  chromosome 1 open reading frame 185
Aliases
GeneCards (Weizmann)C1orf185
Ensembl hg19 (Hinxton)ENSG00000204006 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204006 [Gene_View]  chr1:51102234-51148082 [Contig_View]  C1orf185 [Vega]
ICGC DataPortalENSG00000204006
TCGA cBioPortalC1orf185
AceView (NCBI)C1orf185
Genatlas (Paris)C1orf185
WikiGenes284546
SOURCE (Princeton)C1orf185
Genetics Home Reference (NIH)C1orf185
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf185  -     chr1:51102234-51148082 +  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf185  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblC1orf185 - 1p32.3 [CytoView hg19]  C1orf185 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf185 [Mapview hg19]  C1orf185 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK130995
RefSeq transcript (Entrez)NM_001136508
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf185
Cluster EST : UnigeneHs.176177 [ NCBI ]
CGAP (NCI)Hs.176177
Alternative Splicing GalleryENSG00000204006
Gene ExpressionC1orf185 [ NCBI-GEO ]   C1orf185 [ EBI - ARRAY_EXPRESS ]   C1orf185 [ SEEK ]   C1orf185 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf185 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284546
GTEX Portal (Tissue expression)C1orf185
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T7R7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T7R7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T7R7
Splice isoforms : SwissVarQ5T7R7
PhosPhoSitePlusQ5T7R7
Domains : Interpro (EBI)DUF4718   
Domain families : Pfam (Sanger)DUF4718 (PF15842)   
Domain families : Pfam (NCBI)pfam15842   
Conserved Domain (NCBI)C1orf185
DMDM Disease mutations284546
Blocks (Seattle)C1orf185
SuperfamilyQ5T7R7
Human Protein AtlasENSG00000204006
Peptide AtlasQ5T7R7
IPIIPI00174936   
Protein Interaction databases
DIP (DOE-UCLA)Q5T7R7
IntAct (EBI)Q5T7R7
FunCoupENSG00000204006
BioGRIDC1orf185
STRING (EMBL)C1orf185
ZODIACC1orf185
Ontologies - Pathways
QuickGOQ5T7R7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC1orf185
Atlas of Cancer Signalling NetworkC1orf185
Wikipedia pathwaysC1orf185
Orthology - Evolution
OrthoDB284546
GeneTree (enSembl)ENSG00000204006
Phylogenetic Trees/Animal Genes : TreeFamC1orf185
HOVERGENQ5T7R7
HOGENOMQ5T7R7
Homologs : HomoloGeneC1orf185
Homology/Alignments : Family Browser (UCSC)C1orf185
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf185 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf185
dbVarC1orf185
ClinVarC1orf185
1000_GenomesC1orf185 
Exome Variant ServerC1orf185
ExAC (Exome Aggregation Consortium)C1orf185 (select the gene name)
Genetic variants : HAPMAP284546
Genomic Variants (DGV)C1orf185 [DGVbeta]
DECIPHERC1orf185 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf185 
Mutations
ICGC Data PortalC1orf185 
TCGA Data PortalC1orf185 
Broad Tumor PortalC1orf185
OASIS PortalC1orf185 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf185  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf185
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf185
DgiDB (Drug Gene Interaction Database)C1orf185
DoCM (Curated mutations)C1orf185 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf185 (select a term)
intoGenC1orf185
Cancer3DC1orf185(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf185
Genetic Testing Registry C1orf185
NextProtQ5T7R7 [Medical]
TSGene284546
GENETestsC1orf185
Target ValidationC1orf185
Huge Navigator C1orf185 [HugePedia]
snp3D : Map Gene to Disease284546
BioCentury BCIQC1orf185
ClinGenC1orf185
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284546
Chemical/Pharm GKB GenePA142672433
Clinical trialC1orf185
Miscellaneous
canSAR (ICR)C1orf185 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf185
EVEXC1orf185
GoPubMedC1orf185
iHOPC1orf185
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:51 CEST 2017

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