Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf186 (chromosome 1 open reading frame 186)

Identity

Alias_symbol (synonym)FLJ16052
Other aliasRHEX
HGNC (Hugo) C1orf186
LocusID (NCBI) 440712
Atlas_Id 61070
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 206238872 and ends at 206288647 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NFIC (19p13.3) / C1orf186 (1q32.1)PDE4DIP (1q21.1) / C1orf186 (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf186   25341
Cards
Entrez_Gene (NCBI)C1orf186  440712  chromosome 1 open reading frame 186
AliasesRHEX
GeneCards (Weizmann)C1orf186
Ensembl hg19 (Hinxton)ENSG00000263961 [Gene_View]  chr1:206238872-206288647 [Contig_View]  C1orf186 [Vega]
Ensembl hg38 (Hinxton)ENSG00000263961 [Gene_View]  chr1:206238872-206288647 [Contig_View]  C1orf186 [Vega]
ICGC DataPortalENSG00000263961
TCGA cBioPortalC1orf186
AceView (NCBI)C1orf186
Genatlas (Paris)C1orf186
WikiGenes440712
SOURCE (Princeton)C1orf186
Genetics Home Reference (NIH)C1orf186
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf186  -     chr1:206238872-206288647 -  1q32.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf186  -     1q32.1   [Description]    (hg38-Dec_2013)
EnsemblC1orf186 - 1q32.1 [CytoView hg19]  C1orf186 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIC1orf186 [Mapview hg19]  C1orf186 [Mapview hg38]
OMIM616088   
Gene and transcription
Genbank (Entrez)AI683243 AK122631 BC071785 BX104285
RefSeq transcript (Entrez)NM_001007544
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929294
Consensus coding sequences : CCDS (NCBI)C1orf186
Cluster EST : UnigeneHs.662248 [ NCBI ]
CGAP (NCI)Hs.662248
Alternative Splicing GalleryENSG00000263961
Gene ExpressionC1orf186 [ NCBI-GEO ]   C1orf186 [ EBI - ARRAY_EXPRESS ]   C1orf186 [ SEEK ]   C1orf186 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf186 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440712
GTEX Portal (Tissue expression)C1orf186
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZWK4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZWK4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZWK4
Splice isoforms : SwissVarQ6ZWK4
PhosPhoSitePlusQ6ZWK4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf186
DMDM Disease mutations440712
Blocks (Seattle)C1orf186
SuperfamilyQ6ZWK4
Human Protein AtlasENSG00000263961
Peptide AtlasQ6ZWK4
HPRD17400
IPIIPI00446850   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZWK4
IntAct (EBI)Q6ZWK4
FunCoupENSG00000263961
BioGRIDC1orf186
STRING (EMBL)C1orf186
ZODIACC1orf186
Ontologies - Pathways
QuickGOQ6ZWK4
Ontology : AmiGOplasma membrane  integral component of membrane  
Ontology : EGO-EBIplasma membrane  integral component of membrane  
NDEx NetworkC1orf186
Atlas of Cancer Signalling NetworkC1orf186
Wikipedia pathwaysC1orf186
Orthology - Evolution
OrthoDB440712
GeneTree (enSembl)ENSG00000263961
Phylogenetic Trees/Animal Genes : TreeFamC1orf186
HOVERGENQ6ZWK4
HOGENOMQ6ZWK4
Homologs : HomoloGeneC1orf186
Homology/Alignments : Family Browser (UCSC)C1orf186
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf186 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf186
dbVarC1orf186
ClinVarC1orf186
1000_GenomesC1orf186 
Exome Variant ServerC1orf186
ExAC (Exome Aggregation Consortium)C1orf186 (select the gene name)
Genetic variants : HAPMAP440712
Genomic Variants (DGV)C1orf186 [DGVbeta]
DECIPHER (Syndromes)1:206238872-206288647  ENSG00000263961
CONAN: Copy Number AnalysisC1orf186 
Mutations
ICGC Data PortalC1orf186 
TCGA Data PortalC1orf186 
Broad Tumor PortalC1orf186
OASIS PortalC1orf186 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf186  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf186
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf186
DgiDB (Drug Gene Interaction Database)C1orf186
DoCM (Curated mutations)C1orf186 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf186 (select a term)
intoGenC1orf186
Cancer3DC1orf186(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616088   
Orphanet
MedgenC1orf186
Genetic Testing Registry C1orf186
NextProtQ6ZWK4 [Medical]
TSGene440712
GENETestsC1orf186
Huge Navigator C1orf186 [HugePedia]
snp3D : Map Gene to Disease440712
BioCentury BCIQC1orf186
ClinGenC1orf186
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440712
Chemical/Pharm GKB GenePA142672434
Clinical trialC1orf186
Miscellaneous
canSAR (ICR)C1orf186 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf186
EVEXC1orf186
GoPubMedC1orf186
iHOPC1orf186
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:58 CET 2017

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