Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C1orf189 (chromosome 1 open reading frame 189)

Identity

Other alias-
HGNC (Hugo) C1orf189
LocusID (NCBI) 388701
Atlas_Id 61071
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 154199086 and ends at 154206365 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf189   32305
Cards
Entrez_Gene (NCBI)C1orf189  388701  chromosome 1 open reading frame 189
Aliases
GeneCards (Weizmann)C1orf189
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:154199086-154206365 [Contig_View]  C1orf189 [Vega]
TCGA cBioPortalC1orf189
AceView (NCBI)C1orf189
Genatlas (Paris)C1orf189
WikiGenes388701
SOURCE (Princeton)C1orf189
Genetics Home Reference (NIH)C1orf189
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf189  -     chr1:154199086-154206365 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf189  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblC1orf189 - 1q21.3 [CytoView hg19]  C1orf189 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf189 [Mapview hg19]  C1orf189 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI052706 BC127710 BC130509 HQ258701 HY025946
RefSeq transcript (Entrez)NM_001010979
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf189
Cluster EST : UnigeneHs.104967 [ NCBI ]
CGAP (NCI)Hs.104967
Gene ExpressionC1orf189 [ NCBI-GEO ]   C1orf189 [ EBI - ARRAY_EXPRESS ]   C1orf189 [ SEEK ]   C1orf189 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf189 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388701
GTEX Portal (Tissue expression)C1orf189
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VU69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VU69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VU69
Splice isoforms : SwissVarQ5VU69
PhosPhoSitePlusQ5VU69
Domains : Interpro (EBI)DUF4558   
Domain families : Pfam (Sanger)DUF4558 (PF15104)   
Domain families : Pfam (NCBI)pfam15104   
Conserved Domain (NCBI)C1orf189
DMDM Disease mutations388701
Blocks (Seattle)C1orf189
SuperfamilyQ5VU69
Peptide AtlasQ5VU69
HPRD17373
IPIIPI00374039   
Protein Interaction databases
DIP (DOE-UCLA)Q5VU69
IntAct (EBI)Q5VU69
BioGRIDC1orf189
STRING (EMBL)C1orf189
ZODIACC1orf189
Ontologies - Pathways
QuickGOQ5VU69
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC1orf189
Atlas of Cancer Signalling NetworkC1orf189
Wikipedia pathwaysC1orf189
Orthology - Evolution
OrthoDB388701
Phylogenetic Trees/Animal Genes : TreeFamC1orf189
HOVERGENQ5VU69
HOGENOMQ5VU69
Homologs : HomoloGeneC1orf189
Homology/Alignments : Family Browser (UCSC)C1orf189
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf189 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf189
dbVarC1orf189
ClinVarC1orf189
1000_GenomesC1orf189 
Exome Variant ServerC1orf189
ExAC (Exome Aggregation Consortium)C1orf189 (select the gene name)
Genetic variants : HAPMAP388701
Genomic Variants (DGV)C1orf189 [DGVbeta]
DECIPHERC1orf189 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf189 
Mutations
ICGC Data PortalC1orf189 
TCGA Data PortalC1orf189 
Broad Tumor PortalC1orf189
OASIS PortalC1orf189 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf189  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf189
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf189
DgiDB (Drug Gene Interaction Database)C1orf189
DoCM (Curated mutations)C1orf189 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf189 (select a term)
intoGenC1orf189
Cancer3DC1orf189(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf189
Genetic Testing Registry C1orf189
NextProtQ5VU69 [Medical]
TSGene388701
GENETestsC1orf189
Target ValidationC1orf189
Huge Navigator C1orf189 [HugePedia]
snp3D : Map Gene to Disease388701
BioCentury BCIQC1orf189
ClinGenC1orf189
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388701
Chemical/Pharm GKB GenePA142672400
Clinical trialC1orf189
Miscellaneous
canSAR (ICR)C1orf189 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf189
EVEXC1orf189
GoPubMedC1orf189
iHOPC1orf189
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:51 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.