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C1orf194 (chromosome 1 open reading frame 194)

Identity

Other alias-
HGNC (Hugo) C1orf194
LocusID (NCBI) 127003
Atlas_Id 61072
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 109648573 and ends at 109656479 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ALG14 (1p21.3) / C1orf194 (1p13.3)SPAG17 (1p12) / C1orf194 (1p13.3)WDR47 (1p13.3) / C1orf194 (1p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf194   32331
Cards
Entrez_Gene (NCBI)C1orf194  127003  chromosome 1 open reading frame 194
Aliases
GeneCards (Weizmann)C1orf194
Ensembl hg19 (Hinxton)ENSG00000179902 [Gene_View]  chr1:109648573-109656479 [Contig_View]  C1orf194 [Vega]
Ensembl hg38 (Hinxton)ENSG00000179902 [Gene_View]  chr1:109648573-109656479 [Contig_View]  C1orf194 [Vega]
ICGC DataPortalENSG00000179902
TCGA cBioPortalC1orf194
AceView (NCBI)C1orf194
Genatlas (Paris)C1orf194
WikiGenes127003
SOURCE (Princeton)C1orf194
Genetics Home Reference (NIH)C1orf194
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf194  -     chr1:109648573-109656479 -  1p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf194  -     1p13.3   [Description]    (hg38-Dec_2013)
EnsemblC1orf194 - 1p13.3 [CytoView hg19]  C1orf194 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf194 [Mapview hg19]  C1orf194 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC127905 BG196327 BG772797
RefSeq transcript (Entrez)NM_001122961
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)C1orf194
Cluster EST : UnigeneHs.446962 [ NCBI ]
CGAP (NCI)Hs.446962
Alternative Splicing GalleryENSG00000179902
Gene ExpressionC1orf194 [ NCBI-GEO ]   C1orf194 [ EBI - ARRAY_EXPRESS ]   C1orf194 [ SEEK ]   C1orf194 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf194 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127003
GTEX Portal (Tissue expression)C1orf194
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T5A4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T5A4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T5A4
Splice isoforms : SwissVarQ5T5A4
PhosPhoSitePlusQ5T5A4
Domains : Interpro (EBI)DUF3695   
Domain families : Pfam (Sanger)DUF3695 (PF12494)   
Domain families : Pfam (NCBI)pfam12494   
Conserved Domain (NCBI)C1orf194
DMDM Disease mutations127003
Blocks (Seattle)C1orf194
SuperfamilyQ5T5A4
Human Protein AtlasENSG00000179902
Peptide AtlasQ5T5A4
IPIIPI00102703   IPI00555641   IPI00513933   IPI00983402   IPI00975685   
Protein Interaction databases
DIP (DOE-UCLA)Q5T5A4
IntAct (EBI)Q5T5A4
FunCoupENSG00000179902
BioGRIDC1orf194
STRING (EMBL)C1orf194
ZODIACC1orf194
Ontologies - Pathways
QuickGOQ5T5A4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf194
Atlas of Cancer Signalling NetworkC1orf194
Wikipedia pathwaysC1orf194
Orthology - Evolution
OrthoDB127003
GeneTree (enSembl)ENSG00000179902
Phylogenetic Trees/Animal Genes : TreeFamC1orf194
HOVERGENQ5T5A4
HOGENOMQ5T5A4
Homologs : HomoloGeneC1orf194
Homology/Alignments : Family Browser (UCSC)C1orf194
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf194 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf194
dbVarC1orf194
ClinVarC1orf194
1000_GenomesC1orf194 
Exome Variant ServerC1orf194
ExAC (Exome Aggregation Consortium)C1orf194 (select the gene name)
Genetic variants : HAPMAP127003
Genomic Variants (DGV)C1orf194 [DGVbeta]
DECIPHER (Syndromes)1:109648573-109656479  ENSG00000179902
CONAN: Copy Number AnalysisC1orf194 
Mutations
ICGC Data PortalC1orf194 
TCGA Data PortalC1orf194 
Broad Tumor PortalC1orf194
OASIS PortalC1orf194 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf194  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf194
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf194
DgiDB (Drug Gene Interaction Database)C1orf194
DoCM (Curated mutations)C1orf194 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf194 (select a term)
intoGenC1orf194
Cancer3DC1orf194(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf194
Genetic Testing Registry C1orf194
NextProtQ5T5A4 [Medical]
TSGene127003
GENETestsC1orf194
Huge Navigator C1orf194 [HugePedia]
snp3D : Map Gene to Disease127003
BioCentury BCIQC1orf194
ClinGenC1orf194
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127003
Chemical/Pharm GKB GenePA145149814
Clinical trialC1orf194
Miscellaneous
canSAR (ICR)C1orf194 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf194
EVEXC1orf194
GoPubMedC1orf194
iHOPC1orf194
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:59 CET 2017

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