Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C1orf198 (chromosome 1 open reading frame 198)

Identity

Alias (NCBI)-
HGNC (Hugo) C1orf198
HGNC Alias symbFLJ14525
MGC10710
FLJ16283
DKFZp667D152
FLJ38847
LocusID (NCBI) 84886
Atlas_Id 61074
Location 1q42.2  [Link to chromosome band 1q42]
Location_base_pair Starts at 230837119 and ends at 230868521 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C1orf198 (1q42.2) / GXYLT2 (3p13)C1orf198 (1q42.2) / LZTS3 (20p13)C1orf198 (1q42.2) / RGPD5 (2q13)
GALNT2 (1q42.13) / C1orf198 (1q42.2)SRP14 (15q15.1) / C1orf198 (1q42.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)C1orf198   25900
Cards
Entrez_Gene (NCBI)C1orf198    chromosome 1 open reading frame 198
Aliases
GeneCards (Weizmann)C1orf198
Ensembl hg19 (Hinxton)ENSG00000119280 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119280 [Gene_View]  ENSG00000119280 [Sequence]  chr1:230837119-230868521 [Contig_View]  C1orf198 [Vega]
ICGC DataPortalENSG00000119280
TCGA cBioPortalC1orf198
AceView (NCBI)C1orf198
Genatlas (Paris)C1orf198
SOURCE (Princeton)C1orf198
Genetics Home Reference (NIH)C1orf198
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf198  -     chr1:230837119-230868521 -  1q42.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf198  -     1q42.2   [Description]    (hg19-Feb_2009)
GoldenPathC1orf198 - 1q42.2 [CytoView hg19]  C1orf198 - 1q42.2 [CytoView hg38]
ImmunoBaseENSG00000119280
Genome Data Viewer NCBIC1orf198 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK027431 AK096166 AK131306 AK292433 AL713769
RefSeq transcript (Entrez)NM_001136494 NM_001136495 NM_032800
Consensus coding sequences : CCDS (NCBI)C1orf198
Gene ExpressionC1orf198 [ NCBI-GEO ]   C1orf198 [ EBI - ARRAY_EXPRESS ]   C1orf198 [ SEEK ]   C1orf198 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf198 [ Firebrowse - Broad ]
GenevisibleExpression of C1orf198 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84886
GTEX Portal (Tissue expression)C1orf198
Human Protein AtlasENSG00000119280-C1orf198 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H425   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H425  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H425
PhosPhoSitePlusQ9H425
Domains : Interpro (EBI)DUF4706   
Domain families : Pfam (Sanger)DUF4706 (PF15797)   
Domain families : Pfam (NCBI)pfam15797   
Conserved Domain (NCBI)C1orf198
SuperfamilyQ9H425
AlphaFold pdb e-kbQ9H425   
Human Protein Atlas [tissue]ENSG00000119280-C1orf198 [tissue]
HPRD13359
Protein Interaction databases
DIP (DOE-UCLA)Q9H425
IntAct (EBI)Q9H425
BioGRIDC1orf198
STRING (EMBL)C1orf198
ZODIACC1orf198
Ontologies - Pathways
QuickGOQ9H425
Ontology : AmiGOcytosol  
Ontology : EGO-EBIcytosol  
NDEx NetworkC1orf198
Atlas of Cancer Signalling NetworkC1orf198
Wikipedia pathwaysC1orf198
Orthology - Evolution
OrthoDB84886
GeneTree (enSembl)ENSG00000119280
Phylogenetic Trees/Animal Genes : TreeFamC1orf198
Homologs : HomoloGeneC1orf198
Homology/Alignments : Family Browser (UCSC)C1orf198
Gene fusions - Rearrangements
Fusion : QuiverC1orf198
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf198 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf198
dbVarC1orf198
ClinVarC1orf198
MonarchC1orf198
1000_GenomesC1orf198 
Exome Variant ServerC1orf198
GNOMAD BrowserENSG00000119280
Varsome BrowserC1orf198
ACMGC1orf198 variants
VarityQ9H425
Genomic Variants (DGV)C1orf198 [DGVbeta]
DECIPHERC1orf198 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf198 
Mutations
ICGC Data PortalC1orf198 
TCGA Data PortalC1orf198 
Broad Tumor PortalC1orf198
OASIS PortalC1orf198 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf198  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC1orf198
Mutations and Diseases : HGMDC1orf198
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaC1orf198
DgiDB (Drug Gene Interaction Database)C1orf198
DoCM (Curated mutations)C1orf198
CIViC (Clinical Interpretations of Variants in Cancer)C1orf198
Cancer3DC1orf198
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC1orf198
MedgenC1orf198
Genetic Testing Registry C1orf198
NextProtQ9H425 [Medical]
GENETestsC1orf198
Target ValidationC1orf198
Huge Navigator C1orf198 [HugePedia]
ClinGenC1orf198
Clinical trials, drugs, therapy
MyCancerGenomeC1orf198
Protein Interactions : CTDC1orf198
Pharm GKB GenePA143485319
PharosQ9H425
Clinical trialC1orf198
Miscellaneous
canSAR (ICR)C1orf198
HarmonizomeC1orf198
DataMed IndexC1orf198
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC1orf198
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:44:04 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.