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C1orf198 (chromosome 1 open reading frame 198)

Identity

Alias_symbol (synonym)FLJ14525
MGC10710
FLJ16283
DKFZp667D152
FLJ38847
Other alias-
HGNC (Hugo) C1orf198
LocusID (NCBI) 84886
Atlas_Id 61074
Location 1q42.2  [Link to chromosome band 1q42]
Location_base_pair Starts at 230837119 and ends at 230869589 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C1orf198 (1q42.2) / GXYLT2 (3p13)C1orf198 (1q42.2) / LZTS3 (20p13)C1orf198 (1q42.2) / RGPD5 (2q13)
GALNT2 (1q42.13) / C1orf198 (1q42.2)SRP14 (15q15.1) / C1orf198 (1q42.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf198   25900
Cards
Entrez_Gene (NCBI)C1orf198  84886  chromosome 1 open reading frame 198
Aliases
GeneCards (Weizmann)C1orf198
Ensembl hg19 (Hinxton)ENSG00000119280 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119280 [Gene_View]  chr1:230837119-230869589 [Contig_View]  C1orf198 [Vega]
ICGC DataPortalENSG00000119280
TCGA cBioPortalC1orf198
AceView (NCBI)C1orf198
Genatlas (Paris)C1orf198
WikiGenes84886
SOURCE (Princeton)C1orf198
Genetics Home Reference (NIH)C1orf198
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf198  -     chr1:230837119-230869589 -  1q42.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf198  -     1q42.2   [Description]    (hg19-Feb_2009)
EnsemblC1orf198 - 1q42.2 [CytoView hg19]  C1orf198 - 1q42.2 [CytoView hg38]
Mapping of homologs : NCBIC1orf198 [Mapview hg19]  C1orf198 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027431 AK096166 AK131306 AK292433 AL713769
RefSeq transcript (Entrez)NM_001136494 NM_001136495 NM_032800
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf198
Cluster EST : UnigeneHs.520494 [ NCBI ]
CGAP (NCI)Hs.520494
Alternative Splicing GalleryENSG00000119280
Gene ExpressionC1orf198 [ NCBI-GEO ]   C1orf198 [ EBI - ARRAY_EXPRESS ]   C1orf198 [ SEEK ]   C1orf198 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf198 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84886
GTEX Portal (Tissue expression)C1orf198
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H425   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H425  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H425
Splice isoforms : SwissVarQ9H425
PhosPhoSitePlusQ9H425
Domains : Interpro (EBI)DUF4706   
Domain families : Pfam (Sanger)DUF4706 (PF15797)   
Domain families : Pfam (NCBI)pfam15797   
Conserved Domain (NCBI)C1orf198
DMDM Disease mutations84886
Blocks (Seattle)C1orf198
SuperfamilyQ9H425
Human Protein AtlasENSG00000119280
Peptide AtlasQ9H425
HPRD13359
IPIIPI00013912   IPI00442257   IPI01013335   IPI00975746   IPI00914909   IPI00976853   
Protein Interaction databases
DIP (DOE-UCLA)Q9H425
IntAct (EBI)Q9H425
FunCoupENSG00000119280
BioGRIDC1orf198
STRING (EMBL)C1orf198
ZODIACC1orf198
Ontologies - Pathways
QuickGOQ9H425
Ontology : AmiGOcytosol  
Ontology : EGO-EBIcytosol  
NDEx NetworkC1orf198
Atlas of Cancer Signalling NetworkC1orf198
Wikipedia pathwaysC1orf198
Orthology - Evolution
OrthoDB84886
GeneTree (enSembl)ENSG00000119280
Phylogenetic Trees/Animal Genes : TreeFamC1orf198
HOVERGENQ9H425
HOGENOMQ9H425
Homologs : HomoloGeneC1orf198
Homology/Alignments : Family Browser (UCSC)C1orf198
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf198 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf198
dbVarC1orf198
ClinVarC1orf198
1000_GenomesC1orf198 
Exome Variant ServerC1orf198
ExAC (Exome Aggregation Consortium)C1orf198 (select the gene name)
Genetic variants : HAPMAP84886
Genomic Variants (DGV)C1orf198 [DGVbeta]
DECIPHERC1orf198 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf198 
Mutations
ICGC Data PortalC1orf198 
TCGA Data PortalC1orf198 
Broad Tumor PortalC1orf198
OASIS PortalC1orf198 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf198  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf198
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf198
DgiDB (Drug Gene Interaction Database)C1orf198
DoCM (Curated mutations)C1orf198 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf198 (select a term)
intoGenC1orf198
Cancer3DC1orf198(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf198
Genetic Testing Registry C1orf198
NextProtQ9H425 [Medical]
TSGene84886
GENETestsC1orf198
Target ValidationC1orf198
Huge Navigator C1orf198 [HugePedia]
snp3D : Map Gene to Disease84886
BioCentury BCIQC1orf198
ClinGenC1orf198
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84886
Chemical/Pharm GKB GenePA143485319
Clinical trialC1orf198
Miscellaneous
canSAR (ICR)C1orf198 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf198
EVEXC1orf198
GoPubMedC1orf198
iHOPC1orf198
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:10:49 CEST 2017

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