Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C1orf21 (chromosome 1 open reading frame 21)

Identity

Alias_symbol (synonym)PIG13
Other alias
HGNC (Hugo) C1orf21
LocusID (NCBI) 81563
Atlas_Id 61076
Location 1q25.3  [Link to chromosome band 1q25]
Location_base_pair Starts at 184356150 and ends at 184598155 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C1orf21 (1q25.3) / ANKLE2 (12q24.33)C1orf21 (1q25.3) / C1orf27 (1q31.1)C1orf21 (1q25.3) / LAMC1 (1q25.3)
C1orf21 (1q25.3) / WSCD2 (12q23.3)F3 (1p21.3) / C1orf21 (1q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf21   15494
Cards
Entrez_Gene (NCBI)C1orf21  81563  chromosome 1 open reading frame 21
AliasesPIG13
GeneCards (Weizmann)C1orf21
Ensembl hg19 (Hinxton)ENSG00000116667 [Gene_View]  chr1:184356150-184598155 [Contig_View]  C1orf21 [Vega]
Ensembl hg38 (Hinxton)ENSG00000116667 [Gene_View]  chr1:184356150-184598155 [Contig_View]  C1orf21 [Vega]
ICGC DataPortalENSG00000116667
TCGA cBioPortalC1orf21
AceView (NCBI)C1orf21
Genatlas (Paris)C1orf21
WikiGenes81563
SOURCE (Princeton)C1orf21
Genetics Home Reference (NIH)C1orf21
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf21  -     chr1:184356150-184598155 +  1q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf21  -     1q25.3   [Description]    (hg38-Dec_2013)
EnsemblC1orf21 - 1q25.3 [CytoView hg19]  C1orf21 - 1q25.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf21 [Mapview hg19]  C1orf21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF035282 AF312864 AK056487 AK312062 AL699720
RefSeq transcript (Entrez)NM_030806
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)C1orf21
Cluster EST : UnigeneHs.744936 [ NCBI ]
CGAP (NCI)Hs.744936
Alternative Splicing GalleryENSG00000116667
Gene ExpressionC1orf21 [ NCBI-GEO ]   C1orf21 [ EBI - ARRAY_EXPRESS ]   C1orf21 [ SEEK ]   C1orf21 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81563
GTEX Portal (Tissue expression)C1orf21
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H246   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H246  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H246
Splice isoforms : SwissVarQ9H246
PhosPhoSitePlusQ9H246
Domains : Interpro (EBI)DUF4612   
Domain families : Pfam (Sanger)DUF4612 (PF15389)   
Domain families : Pfam (NCBI)pfam15389   
Conserved Domain (NCBI)C1orf21
DMDM Disease mutations81563
Blocks (Seattle)C1orf21
SuperfamilyQ9H246
Human Protein AtlasENSG00000116667
Peptide AtlasQ9H246
HPRD12721
IPIIPI00006599   IPI00645150   
Protein Interaction databases
DIP (DOE-UCLA)Q9H246
IntAct (EBI)Q9H246
FunCoupENSG00000116667
BioGRIDC1orf21
STRING (EMBL)C1orf21
ZODIACC1orf21
Ontologies - Pathways
QuickGOQ9H246
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC1orf21
Atlas of Cancer Signalling NetworkC1orf21
Wikipedia pathwaysC1orf21
Orthology - Evolution
OrthoDB81563
GeneTree (enSembl)ENSG00000116667
Phylogenetic Trees/Animal Genes : TreeFamC1orf21
HOVERGENQ9H246
HOGENOMQ9H246
Homologs : HomoloGeneC1orf21
Homology/Alignments : Family Browser (UCSC)C1orf21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf21
dbVarC1orf21
ClinVarC1orf21
1000_GenomesC1orf21 
Exome Variant ServerC1orf21
ExAC (Exome Aggregation Consortium)C1orf21 (select the gene name)
Genetic variants : HAPMAP81563
Genomic Variants (DGV)C1orf21 [DGVbeta]
DECIPHER (Syndromes)1:184356150-184598155  ENSG00000116667
CONAN: Copy Number AnalysisC1orf21 
Mutations
ICGC Data PortalC1orf21 
TCGA Data PortalC1orf21 
Broad Tumor PortalC1orf21
OASIS PortalC1orf21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf21
DgiDB (Drug Gene Interaction Database)C1orf21
DoCM (Curated mutations)C1orf21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf21 (select a term)
intoGenC1orf21
Cancer3DC1orf21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf21
Genetic Testing Registry C1orf21
NextProtQ9H246 [Medical]
TSGene81563
GENETestsC1orf21
Huge Navigator C1orf21 [HugePedia]
snp3D : Map Gene to Disease81563
BioCentury BCIQC1orf21
ClinGenC1orf21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81563
Chemical/Pharm GKB GenePA25610
Clinical trialC1orf21
Miscellaneous
canSAR (ICR)C1orf21 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf21
EVEXC1orf21
GoPubMedC1orf21
iHOPC1orf21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:59 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.