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C1orf210 (chromosome 1 open reading frame 210)

Identity

Alias_symbol (synonym)MGC52423
Other aliasTEMP
HGNC (Hugo) C1orf210
LocusID (NCBI) 149466
Atlas_Id 61077
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 43281886 and ends at 43285617 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C1orf210 (1p34.2) / FRMD6 (14q22.1)RPL27 (17q21.31) / C1orf210 (1p34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf210   28755
Cards
Entrez_Gene (NCBI)C1orf210  149466  chromosome 1 open reading frame 210
AliasesTEMP
GeneCards (Weizmann)C1orf210
Ensembl hg19 (Hinxton)ENSG00000253313 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253313 [Gene_View]  chr1:43281886-43285617 [Contig_View]  C1orf210 [Vega]
ICGC DataPortalENSG00000253313
TCGA cBioPortalC1orf210
AceView (NCBI)C1orf210
Genatlas (Paris)C1orf210
WikiGenes149466
SOURCE (Princeton)C1orf210
Genetics Home Reference (NIH)C1orf210
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf210  -     chr1:43281886-43285617 -  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf210  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblC1orf210 - 1p34.2 [CytoView hg19]  C1orf210 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIC1orf210 [Mapview hg19]  C1orf210 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL696898 BC041633 BM273035 BM784450 HQ447652
RefSeq transcript (Entrez)NM_001164829 NM_182517
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf210
Cluster EST : UnigeneHs.158963 [ NCBI ]
CGAP (NCI)Hs.158963
Alternative Splicing GalleryENSG00000253313
Gene ExpressionC1orf210 [ NCBI-GEO ]   C1orf210 [ EBI - ARRAY_EXPRESS ]   C1orf210 [ SEEK ]   C1orf210 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf210 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149466
GTEX Portal (Tissue expression)C1orf210
Human Protein AtlasENSG00000253313-C1orf210 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVY1
Splice isoforms : SwissVarQ8IVY1
PhosPhoSitePlusQ8IVY1
Domains : Interpro (EBI)TEMP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf210
DMDM Disease mutations149466
Blocks (Seattle)C1orf210
SuperfamilyQ8IVY1
Human Protein Atlas [tissue]ENSG00000253313-C1orf210 [tissue]
Peptide AtlasQ8IVY1
HPRD14677
IPIIPI00217183   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVY1
IntAct (EBI)Q8IVY1
FunCoupENSG00000253313
BioGRIDC1orf210
STRING (EMBL)C1orf210
ZODIACC1orf210
Ontologies - Pathways
QuickGOQ8IVY1
Ontology : AmiGOearly endosome  plasma membrane  integral component of membrane  recycling endosome  
Ontology : EGO-EBIearly endosome  plasma membrane  integral component of membrane  recycling endosome  
NDEx NetworkC1orf210
Atlas of Cancer Signalling NetworkC1orf210
Wikipedia pathwaysC1orf210
Orthology - Evolution
OrthoDB149466
GeneTree (enSembl)ENSG00000253313
Phylogenetic Trees/Animal Genes : TreeFamC1orf210
HOVERGENQ8IVY1
HOGENOMQ8IVY1
Homologs : HomoloGeneC1orf210
Homology/Alignments : Family Browser (UCSC)C1orf210
Gene fusions - Rearrangements
Fusion: Tumor Portal C1orf210
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf210 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf210
dbVarC1orf210
ClinVarC1orf210
1000_GenomesC1orf210 
Exome Variant ServerC1orf210
ExAC (Exome Aggregation Consortium)ENSG00000253313
GNOMAD BrowserENSG00000253313
Genetic variants : HAPMAP149466
Genomic Variants (DGV)C1orf210 [DGVbeta]
DECIPHERC1orf210 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf210 
Mutations
ICGC Data PortalC1orf210 
TCGA Data PortalC1orf210 
Broad Tumor PortalC1orf210
OASIS PortalC1orf210 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf210  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf210
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf210
DgiDB (Drug Gene Interaction Database)C1orf210
DoCM (Curated mutations)C1orf210 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf210 (select a term)
intoGenC1orf210
Cancer3DC1orf210(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf210
Genetic Testing Registry C1orf210
NextProtQ8IVY1 [Medical]
TSGene149466
GENETestsC1orf210
Target ValidationC1orf210
Huge Navigator C1orf210 [HugePedia]
snp3D : Map Gene to Disease149466
BioCentury BCIQC1orf210
ClinGenC1orf210
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149466
Chemical/Pharm GKB GenePA144596510
Clinical trialC1orf210
Miscellaneous
canSAR (ICR)C1orf210 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf210
EVEXC1orf210
GoPubMedC1orf210
iHOPC1orf210
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:40:11 CET 2017

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