Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C1orf216 (chromosome 1 open reading frame 216)

Identity

Alias_symbol (synonym)FLJ38984
Other alias-
HGNC (Hugo) C1orf216
LocusID (NCBI) 127703
Atlas_Id 61078
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 35713876 and ends at 35716911 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf216   26800
Cards
Entrez_Gene (NCBI)C1orf216  127703  chromosome 1 open reading frame 216
Aliases
GeneCards (Weizmann)C1orf216
Ensembl hg19 (Hinxton)ENSG00000142686 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142686 [Gene_View]  chr1:35713876-35716911 [Contig_View]  C1orf216 [Vega]
ICGC DataPortalENSG00000142686
TCGA cBioPortalC1orf216
AceView (NCBI)C1orf216
Genatlas (Paris)C1orf216
WikiGenes127703
SOURCE (Princeton)C1orf216
Genetics Home Reference (NIH)C1orf216
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf216  -     chr1:35713876-35716911 -  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf216  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblC1orf216 - 1p34.3 [CytoView hg19]  C1orf216 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf216 [Mapview hg19]  C1orf216 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096303 AK096466 AK294352 BC026909 DC314927
RefSeq transcript (Entrez)NM_001348691 NM_152374
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf216
Cluster EST : UnigeneHs.112023 [ NCBI ]
CGAP (NCI)Hs.112023
Alternative Splicing GalleryENSG00000142686
Gene ExpressionC1orf216 [ NCBI-GEO ]   C1orf216 [ EBI - ARRAY_EXPRESS ]   C1orf216 [ SEEK ]   C1orf216 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf216 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127703
GTEX Portal (Tissue expression)C1orf216
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAB5
Splice isoforms : SwissVarQ8TAB5
PhosPhoSitePlusQ8TAB5
Domains : Interpro (EBI)DUF4653   
Domain families : Pfam (Sanger)DUF4653 (PF15546)   
Domain families : Pfam (NCBI)pfam15546   
Conserved Domain (NCBI)C1orf216
DMDM Disease mutations127703
Blocks (Seattle)C1orf216
SuperfamilyQ8TAB5
Human Protein AtlasENSG00000142686
Peptide AtlasQ8TAB5
HPRD08798
IPIIPI00152026   IPI00910312   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAB5
IntAct (EBI)Q8TAB5
FunCoupENSG00000142686
BioGRIDC1orf216
STRING (EMBL)C1orf216
ZODIACC1orf216
Ontologies - Pathways
QuickGOQ8TAB5
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC1orf216
Atlas of Cancer Signalling NetworkC1orf216
Wikipedia pathwaysC1orf216
Orthology - Evolution
OrthoDB127703
GeneTree (enSembl)ENSG00000142686
Phylogenetic Trees/Animal Genes : TreeFamC1orf216
HOVERGENQ8TAB5
HOGENOMQ8TAB5
Homologs : HomoloGeneC1orf216
Homology/Alignments : Family Browser (UCSC)C1orf216
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf216 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf216
dbVarC1orf216
ClinVarC1orf216
1000_GenomesC1orf216 
Exome Variant ServerC1orf216
ExAC (Exome Aggregation Consortium)C1orf216 (select the gene name)
Genetic variants : HAPMAP127703
Genomic Variants (DGV)C1orf216 [DGVbeta]
DECIPHERC1orf216 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf216 
Mutations
ICGC Data PortalC1orf216 
TCGA Data PortalC1orf216 
Broad Tumor PortalC1orf216
OASIS PortalC1orf216 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf216  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf216
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf216
DgiDB (Drug Gene Interaction Database)C1orf216
DoCM (Curated mutations)C1orf216 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf216 (select a term)
intoGenC1orf216
Cancer3DC1orf216(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf216
Genetic Testing Registry C1orf216
NextProtQ8TAB5 [Medical]
TSGene127703
GENETestsC1orf216
Target ValidationC1orf216
Huge Navigator C1orf216 [HugePedia]
snp3D : Map Gene to Disease127703
BioCentury BCIQC1orf216
ClinGenC1orf216
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127703
Chemical/Pharm GKB GenePA162378892
Clinical trialC1orf216
Miscellaneous
canSAR (ICR)C1orf216 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf216
EVEXC1orf216
GoPubMedC1orf216
iHOPC1orf216
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:53 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.