Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf220 (chromosome 1 putative open reading frame 220)

Identity

Alias (NCBI)-
HGNC (Hugo) C1orf220
HGNC Alias symbFLJ35530
LocusID (NCBI) 400798
Atlas_Id 61079
Location 1q25.2  [Link to chromosome band 1q25]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)C1orf220   33805
Cards
Entrez_Gene (NCBI)C1orf220    chromosome 1 putative open reading frame 220
Aliases
GeneCards (Weizmann)C1orf220
Ensembl hg19 (Hinxton)ENSG00000213057 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213057 [Gene_View]  ENSG00000213057 [Sequence]  - [Contig_View]  C1orf220 [Vega]
ICGC DataPortalENSG00000213057
TCGA cBioPortalC1orf220
AceView (NCBI)C1orf220
Genatlas (Paris)C1orf220
SOURCE (Princeton)C1orf220
Genetics Home Reference (NIH)C1orf220
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf220  -  
GoldenPath hg19 (UCSC)C1orf220  -  
GoldenPathC1orf220 - [CytoView hg19]  C1orf220 - [CytoView hg38]
ImmunoBaseENSG00000213057
genome Data Viewer NCBIC1orf220 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK092849 BC136727
RefSeq transcript (Entrez)NM_207467
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf220
Alternative Splicing GalleryENSG00000213057
Gene ExpressionC1orf220 [ NCBI-GEO ]   C1orf220 [ EBI - ARRAY_EXPRESS ]   C1orf220 [ SEEK ]   C1orf220 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf220 [ Firebrowse - Broad ]
GenevisibleExpression of C1orf220 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400798
GTEX Portal (Tissue expression)C1orf220
Human Protein AtlasENSG00000213057-C1orf220 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T0J3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T0J3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T0J3
Splice isoforms : SwissVarQ5T0J3
PhosPhoSitePlusQ5T0J3
Domains : Interpro (EBI)DUF5576   
Domain families : Pfam (Sanger)DUF5576 (PF17739)   
Domain families : Pfam (NCBI)pfam17739   
Conserved Domain (NCBI)C1orf220
Blocks (Seattle)C1orf220
SuperfamilyQ5T0J3
Human Protein Atlas [tissue]ENSG00000213057-C1orf220 [tissue]
Peptide AtlasQ5T0J3
HPRD13417
IPIIPI00300569   IPI00514361   
Protein Interaction databases
DIP (DOE-UCLA)Q5T0J3
IntAct (EBI)Q5T0J3
BioGRIDC1orf220
STRING (EMBL)C1orf220
ZODIACC1orf220
Ontologies - Pathways
QuickGOQ5T0J3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf220
Atlas of Cancer Signalling NetworkC1orf220
Wikipedia pathwaysC1orf220
Orthology - Evolution
OrthoDB400798
GeneTree (enSembl)ENSG00000213057
Phylogenetic Trees/Animal Genes : TreeFamC1orf220
HOGENOMQ5T0J3
Homologs : HomoloGeneC1orf220
Homology/Alignments : Family Browser (UCSC)C1orf220
Gene fusions - Rearrangements
Fusion : QuiverC1orf220
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf220 [hg38]
dbVarC1orf220
ClinVarC1orf220
MonarchC1orf220
1000_GenomesC1orf220 
Exome Variant ServerC1orf220
GNOMAD BrowserENSG00000213057
Varsome BrowserC1orf220
Genomic Variants (DGV)C1orf220 [DGVbeta]
DECIPHERC1orf220 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf220 
Mutations
ICGC Data PortalC1orf220 
TCGA Data PortalC1orf220 
Broad Tumor PortalC1orf220
OASIS PortalC1orf220 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC1orf220
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf220
DgiDB (Drug Gene Interaction Database)C1orf220
DoCM (Curated mutations)C1orf220 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf220 (select a term)
intoGenC1orf220
Cancer3DC1orf220(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC1orf220
MedgenC1orf220
Genetic Testing Registry C1orf220
NextProtQ5T0J3 [Medical]
GENETestsC1orf220
Target ValidationC1orf220
Huge Navigator C1orf220 [HugePedia]
ClinGenC1orf220
Clinical trials, drugs, therapy
MyCancerGenomeC1orf220
Protein Interactions : CTD
Pharm GKB GenePA162378901
Clinical trialC1orf220
Miscellaneous
canSAR (ICR)C1orf220 (select the gene name)
HarmonizomeC1orf220
DataMed IndexC1orf220
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf220
EVEXC1orf220
GoPubMedC1orf220
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 16:47:51 CET 2020

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