Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C1orf220 (chromosome 1 open reading frame 220)

Identity

Alias_symbol (synonym)FLJ35530
Other alias-
HGNC (Hugo) C1orf220
LocusID (NCBI) 400798
Atlas_Id 61079
Location 1q25.2  [Link to chromosome band 1q25]
Location_base_pair Starts at 178511931 and ends at 178518024 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf220   33805
Cards
Entrez_Gene (NCBI)C1orf220  400798  chromosome 1 open reading frame 220
Aliases
GeneCards (Weizmann)C1orf220
Ensembl hg19 (Hinxton)ENSG00000213057 [Gene_View]  chr1:178511931-178518024 [Contig_View]  C1orf220 [Vega]
Ensembl hg38 (Hinxton)ENSG00000213057 [Gene_View]  chr1:178511931-178518024 [Contig_View]  C1orf220 [Vega]
ICGC DataPortalENSG00000213057
TCGA cBioPortalC1orf220
AceView (NCBI)C1orf220
Genatlas (Paris)C1orf220
WikiGenes400798
SOURCE (Princeton)C1orf220
Genetics Home Reference (NIH)C1orf220
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf220  -     chr1:178511931-178518024 +  1q25.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf220  -     1q25.2   [Description]    (hg38-Dec_2013)
EnsemblC1orf220 - 1q25.2 [CytoView hg19]  C1orf220 - 1q25.2 [CytoView hg38]
Mapping of homologs : NCBIC1orf220 [Mapview hg19]  C1orf220 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092849 BC136727 LK938639 LK938640
RefSeq transcript (Entrez)NM_207467
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)C1orf220
Cluster EST : UnigeneHs.668085 [ NCBI ]
CGAP (NCI)Hs.668085
Alternative Splicing GalleryENSG00000213057
Gene ExpressionC1orf220 [ NCBI-GEO ]   C1orf220 [ EBI - ARRAY_EXPRESS ]   C1orf220 [ SEEK ]   C1orf220 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf220 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400798
GTEX Portal (Tissue expression)C1orf220
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T0J3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T0J3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T0J3
Splice isoforms : SwissVarQ5T0J3
PhosPhoSitePlusQ5T0J3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf220
DMDM Disease mutations400798
Blocks (Seattle)C1orf220
SuperfamilyQ5T0J3
Human Protein AtlasENSG00000213057
Peptide AtlasQ5T0J3
HPRD13417
IPIIPI00300569   IPI00514361   
Protein Interaction databases
DIP (DOE-UCLA)Q5T0J3
IntAct (EBI)Q5T0J3
FunCoupENSG00000213057
BioGRIDC1orf220
STRING (EMBL)C1orf220
ZODIACC1orf220
Ontologies - Pathways
QuickGOQ5T0J3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf220
Atlas of Cancer Signalling NetworkC1orf220
Wikipedia pathwaysC1orf220
Orthology - Evolution
OrthoDB400798
GeneTree (enSembl)ENSG00000213057
Phylogenetic Trees/Animal Genes : TreeFamC1orf220
HOVERGENQ5T0J3
HOGENOMQ5T0J3
Homologs : HomoloGeneC1orf220
Homology/Alignments : Family Browser (UCSC)C1orf220
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf220 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf220
dbVarC1orf220
ClinVarC1orf220
1000_GenomesC1orf220 
Exome Variant ServerC1orf220
ExAC (Exome Aggregation Consortium)C1orf220 (select the gene name)
Genetic variants : HAPMAP400798
Genomic Variants (DGV)C1orf220 [DGVbeta]
DECIPHER (Syndromes)1:178511931-178518024  ENSG00000213057
CONAN: Copy Number AnalysisC1orf220 
Mutations
ICGC Data PortalC1orf220 
TCGA Data PortalC1orf220 
Broad Tumor PortalC1orf220
OASIS PortalC1orf220 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf220  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf220
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf220
DgiDB (Drug Gene Interaction Database)C1orf220
DoCM (Curated mutations)C1orf220 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf220 (select a term)
intoGenC1orf220
Cancer3DC1orf220(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf220
Genetic Testing Registry C1orf220
NextProtQ5T0J3 [Medical]
TSGene400798
GENETestsC1orf220
Huge Navigator C1orf220 [HugePedia]
snp3D : Map Gene to Disease400798
BioCentury BCIQC1orf220
ClinGenC1orf220
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400798
Chemical/Pharm GKB GenePA162378901
Clinical trialC1orf220
Miscellaneous
canSAR (ICR)C1orf220 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf220
EVEXC1orf220
GoPubMedC1orf220
iHOPC1orf220
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:00 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.