Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf226 (chromosome 1 open reading frame 226)

Identity

Alias_symbol (synonym)FLJ13137
Other alias-
HGNC (Hugo) C1orf226
LocusID (NCBI) 400793
Atlas_Id 61080
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 162381730 and ends at 162386818 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NOS1AP (1q23.3) / C1orf226 (1q23.3)PTEN (10q23.31) / C1orf226 (1q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf226   34351
Cards
Entrez_Gene (NCBI)C1orf226  400793  chromosome 1 open reading frame 226
Aliases
GeneCards (Weizmann)C1orf226
Ensembl hg19 (Hinxton)ENSG00000239887 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239887 [Gene_View]  chr1:162381730-162386818 [Contig_View]  C1orf226 [Vega]
ICGC DataPortalENSG00000239887
TCGA cBioPortalC1orf226
AceView (NCBI)C1orf226
Genatlas (Paris)C1orf226
WikiGenes400793
SOURCE (Princeton)C1orf226
Genetics Home Reference (NIH)C1orf226
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf226  -     chr1:162381730-162386818 +  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf226  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblC1orf226 - 1q23.3 [CytoView hg19]  C1orf226 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf226 [Mapview hg19]  C1orf226 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI480219 AK023199 AK125122 AK293907 BC127743
RefSeq transcript (Entrez)NM_001085375 NM_001135240
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf226
Cluster EST : UnigeneHs.447011 [ NCBI ]
CGAP (NCI)Hs.447011
Alternative Splicing GalleryENSG00000239887
Gene ExpressionC1orf226 [ NCBI-GEO ]   C1orf226 [ EBI - ARRAY_EXPRESS ]   C1orf226 [ SEEK ]   C1orf226 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf226 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400793
GTEX Portal (Tissue expression)C1orf226
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1L170   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1L170  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1L170
Splice isoforms : SwissVarA1L170
PhosPhoSitePlusA1L170
Domains : Interpro (EBI)DUF4628   
Domain families : Pfam (Sanger)DUF4628 (PF15429)   
Domain families : Pfam (NCBI)pfam15429   
Conserved Domain (NCBI)C1orf226
DMDM Disease mutations400793
Blocks (Seattle)C1orf226
SuperfamilyA1L170
Human Protein AtlasENSG00000239887
Peptide AtlasA1L170
IPIIPI00401682   IPI01008902   IPI00917912   
Protein Interaction databases
DIP (DOE-UCLA)A1L170
IntAct (EBI)A1L170
FunCoupENSG00000239887
BioGRIDC1orf226
STRING (EMBL)C1orf226
ZODIACC1orf226
Ontologies - Pathways
QuickGOA1L170
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf226
Atlas of Cancer Signalling NetworkC1orf226
Wikipedia pathwaysC1orf226
Orthology - Evolution
OrthoDB400793
GeneTree (enSembl)ENSG00000239887
Phylogenetic Trees/Animal Genes : TreeFamC1orf226
HOVERGENA1L170
HOGENOMA1L170
Homologs : HomoloGeneC1orf226
Homology/Alignments : Family Browser (UCSC)C1orf226
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf226 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf226
dbVarC1orf226
ClinVarC1orf226
1000_GenomesC1orf226 
Exome Variant ServerC1orf226
ExAC (Exome Aggregation Consortium)C1orf226 (select the gene name)
Genetic variants : HAPMAP400793
Genomic Variants (DGV)C1orf226 [DGVbeta]
DECIPHERC1orf226 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf226 
Mutations
ICGC Data PortalC1orf226 
TCGA Data PortalC1orf226 
Broad Tumor PortalC1orf226
OASIS PortalC1orf226 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf226  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf226
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf226
DgiDB (Drug Gene Interaction Database)C1orf226
DoCM (Curated mutations)C1orf226 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf226 (select a term)
intoGenC1orf226
Cancer3DC1orf226(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf226
Genetic Testing Registry C1orf226
NextProtA1L170 [Medical]
TSGene400793
GENETestsC1orf226
Target ValidationC1orf226
Huge Navigator C1orf226 [HugePedia]
snp3D : Map Gene to Disease400793
BioCentury BCIQC1orf226
ClinGenC1orf226
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400793
Chemical/Pharm GKB GenePA164717033
Clinical trialC1orf226
Miscellaneous
canSAR (ICR)C1orf226 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf226
EVEXC1orf226
GoPubMedC1orf226
iHOPC1orf226
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:53 CEST 2017

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