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C1orf228 (chromosome 1 open reading frame 228)

Identity

Alias_namesNCRNA00082
non-protein coding RNA 82
Alias_symbol (synonym)MGC33556
p40
Other alias
HGNC (Hugo) C1orf228
LocusID (NCBI) 339541
Atlas_Id 61081
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 44674722 and ends at 44725591 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf228   34345
Cards
Entrez_Gene (NCBI)C1orf228  339541  chromosome 1 open reading frame 228
AliasesNCRNA00082; p40
GeneCards (Weizmann)C1orf228
Ensembl hg19 (Hinxton)ENSG00000198520 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198520 [Gene_View]  chr1:44674722-44725591 [Contig_View]  C1orf228 [Vega]
ICGC DataPortalENSG00000198520
TCGA cBioPortalC1orf228
AceView (NCBI)C1orf228
Genatlas (Paris)C1orf228
WikiGenes339541
SOURCE (Princeton)C1orf228
Genetics Home Reference (NIH)C1orf228
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf228  -     chr1:44674722-44725591 +  1p34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf228  -     1p34.1   [Description]    (hg19-Feb_2009)
EnsemblC1orf228 - 1p34.1 [CytoView hg19]  C1orf228 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBIC1orf228 [Mapview hg19]  C1orf228 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY254217 BC026115 BX112141
RefSeq transcript (Entrez)NM_001004307 NM_001145636
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf228
Cluster EST : UnigeneHs.173679 [ NCBI ]
CGAP (NCI)Hs.173679
Alternative Splicing GalleryENSG00000198520
Gene ExpressionC1orf228 [ NCBI-GEO ]   C1orf228 [ EBI - ARRAY_EXPRESS ]   C1orf228 [ SEEK ]   C1orf228 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf228 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339541
GTEX Portal (Tissue expression)C1orf228
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PIY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PIY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PIY5
Splice isoforms : SwissVarQ6PIY5
PhosPhoSitePlusQ6PIY5
Domains : Interpro (EBI)ARM-like    ARM-type_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf228
DMDM Disease mutations339541
Blocks (Seattle)C1orf228
SuperfamilyQ6PIY5
Human Protein AtlasENSG00000198520
Peptide AtlasQ6PIY5
HPRD17525
IPIIPI00884920   IPI00827689   IPI00945071   IPI00945446   IPI00946147   IPI00952945   IPI00945608   IPI00945231   
Protein Interaction databases
DIP (DOE-UCLA)Q6PIY5
IntAct (EBI)Q6PIY5
FunCoupENSG00000198520
BioGRIDC1orf228
STRING (EMBL)C1orf228
ZODIACC1orf228
Ontologies - Pathways
QuickGOQ6PIY5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf228
Atlas of Cancer Signalling NetworkC1orf228
Wikipedia pathwaysC1orf228
Orthology - Evolution
OrthoDB339541
GeneTree (enSembl)ENSG00000198520
Phylogenetic Trees/Animal Genes : TreeFamC1orf228
HOVERGENQ6PIY5
HOGENOMQ6PIY5
Homologs : HomoloGeneC1orf228
Homology/Alignments : Family Browser (UCSC)C1orf228
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf228 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf228
dbVarC1orf228
ClinVarC1orf228
1000_GenomesC1orf228 
Exome Variant ServerC1orf228
ExAC (Exome Aggregation Consortium)C1orf228 (select the gene name)
Genetic variants : HAPMAP339541
Genomic Variants (DGV)C1orf228 [DGVbeta]
DECIPHERC1orf228 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf228 
Mutations
ICGC Data PortalC1orf228 
TCGA Data PortalC1orf228 
Broad Tumor PortalC1orf228
OASIS PortalC1orf228 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf228  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf228
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf228
DgiDB (Drug Gene Interaction Database)C1orf228
DoCM (Curated mutations)C1orf228 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf228 (select a term)
intoGenC1orf228
Cancer3DC1orf228(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf228
Genetic Testing Registry C1orf228
NextProtQ6PIY5 [Medical]
TSGene339541
GENETestsC1orf228
Target ValidationC1orf228
Huge Navigator C1orf228 [HugePedia]
snp3D : Map Gene to Disease339541
BioCentury BCIQC1orf228
ClinGenC1orf228
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339541
Chemical/Pharm GKB GenePA164717053
Clinical trialC1orf228
Miscellaneous
canSAR (ICR)C1orf228 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf228
EVEXC1orf228
GoPubMedC1orf228
iHOPC1orf228
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:54 CEST 2017

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