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C1orf229 (chromosome 1 open reading frame 229)

Identity

Alias_symbol (synonym)FLJ45717
Other alias-
HGNC (Hugo) C1orf229
LocusID (NCBI) 388759
Atlas_Id 61082
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 247110160 and ends at 247112417 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf229   33759
Cards
Entrez_Gene (NCBI)C1orf229  388759  chromosome 1 open reading frame 229
Aliases
GeneCards (Weizmann)C1orf229
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:247110160-247112417 [Contig_View]  C1orf229 [Vega]
TCGA cBioPortalC1orf229
AceView (NCBI)C1orf229
Genatlas (Paris)C1orf229
WikiGenes388759
SOURCE (Princeton)C1orf229
Genetics Home Reference (NIH)C1orf229
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf229  -     chr1:247110160-247112417 -  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf229  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblC1orf229 - 1q44 [CytoView hg19]  C1orf229 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIC1orf229 [Mapview hg19]  C1orf229 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127619 BC156415 BC172473
RefSeq transcript (Entrez)NM_207401
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf229
Cluster EST : UnigeneHs.456511 [ NCBI ]
CGAP (NCI)Hs.456511
Gene ExpressionC1orf229 [ NCBI-GEO ]   C1orf229 [ EBI - ARRAY_EXPRESS ]   C1orf229 [ SEEK ]   C1orf229 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf229 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388759
GTEX Portal (Tissue expression)C1orf229
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZS94   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZS94  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZS94
Splice isoforms : SwissVarQ6ZS94
PhosPhoSitePlusQ6ZS94
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf229
DMDM Disease mutations388759
Blocks (Seattle)C1orf229
SuperfamilyQ6ZS94
Peptide AtlasQ6ZS94
HPRD13511
IPIIPI00410467   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZS94
IntAct (EBI)Q6ZS94
BioGRIDC1orf229
STRING (EMBL)C1orf229
ZODIACC1orf229
Ontologies - Pathways
QuickGOQ6ZS94
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf229
Atlas of Cancer Signalling NetworkC1orf229
Wikipedia pathwaysC1orf229
Orthology - Evolution
OrthoDB388759
Phylogenetic Trees/Animal Genes : TreeFamC1orf229
HOVERGENQ6ZS94
HOGENOMQ6ZS94
Homologs : HomoloGeneC1orf229
Homology/Alignments : Family Browser (UCSC)C1orf229
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf229 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf229
dbVarC1orf229
ClinVarC1orf229
1000_GenomesC1orf229 
Exome Variant ServerC1orf229
ExAC (Exome Aggregation Consortium)C1orf229 (select the gene name)
Genetic variants : HAPMAP388759
Genomic Variants (DGV)C1orf229 [DGVbeta]
DECIPHERC1orf229 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf229 
Mutations
ICGC Data PortalC1orf229 
TCGA Data PortalC1orf229 
Broad Tumor PortalC1orf229
OASIS PortalC1orf229 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf229  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf229
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf229
DgiDB (Drug Gene Interaction Database)C1orf229
DoCM (Curated mutations)C1orf229 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf229 (select a term)
intoGenC1orf229
Cancer3DC1orf229(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf229
Genetic Testing Registry C1orf229
NextProtQ6ZS94 [Medical]
TSGene388759
GENETestsC1orf229
Target ValidationC1orf229
Huge Navigator C1orf229 [HugePedia]
snp3D : Map Gene to Disease388759
BioCentury BCIQC1orf229
ClinGenC1orf229
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388759
Chemical/Pharm GKB GenePA165750489
Clinical trialC1orf229
Miscellaneous
canSAR (ICR)C1orf229 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf229
EVEXC1orf229
GoPubMedC1orf229
iHOPC1orf229
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:03:06 CEST 2017

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