Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf233 (chromosome 1 open reading frame 233)

Identity

Other alias-
HGNC (Hugo) C1orf233
LocusID (NCBI) 643988
Atlas_Id 61083
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1533388 and ends at 1535476 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf233   42951
Cards
Entrez_Gene (NCBI)C1orf233  643988  chromosome 1 open reading frame 233
Aliases
GeneCards (Weizmann)C1orf233
Ensembl hg19 (Hinxton)ENSG00000228594 [Gene_View]  chr1:1533388-1535476 [Contig_View]  C1orf233 [Vega]
Ensembl hg38 (Hinxton)ENSG00000228594 [Gene_View]  chr1:1533388-1535476 [Contig_View]  C1orf233 [Vega]
ICGC DataPortalENSG00000228594
TCGA cBioPortalC1orf233
AceView (NCBI)C1orf233
Genatlas (Paris)C1orf233
WikiGenes643988
SOURCE (Princeton)C1orf233
Genetics Home Reference (NIH)C1orf233
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf233  -     chr1:1533388-1535476 -  1p36.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf233  -     1p36.33   [Description]    (hg38-Dec_2013)
EnsemblC1orf233 - 1p36.33 [CytoView hg19]  C1orf233 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIC1orf233 [Mapview hg19]  C1orf233 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB188495 BC013276 BC070393 BU733865 LN607841
RefSeq transcript (Entrez)NM_001242659
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929288
Consensus coding sequences : CCDS (NCBI)C1orf233
Cluster EST : UnigeneHs.528816 [ NCBI ]
CGAP (NCI)Hs.528816
Alternative Splicing GalleryENSG00000228594
Gene ExpressionC1orf233 [ NCBI-GEO ]   C1orf233 [ EBI - ARRAY_EXPRESS ]   C1orf233 [ SEEK ]   C1orf233 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf233 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643988
GTEX Portal (Tissue expression)C1orf233
Protein : pattern, domain, 3D structure
UniProt/SwissProtF2Z333   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtF2Z333  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProF2Z333
Splice isoforms : SwissVarF2Z333
PhosPhoSitePlusF2Z333
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf233
DMDM Disease mutations643988
Blocks (Seattle)C1orf233
SuperfamilyF2Z333
Human Protein AtlasENSG00000228594
Peptide AtlasF2Z333
IPIIPI00748705   
Protein Interaction databases
DIP (DOE-UCLA)F2Z333
IntAct (EBI)F2Z333
FunCoupENSG00000228594
BioGRIDC1orf233
STRING (EMBL)C1orf233
ZODIACC1orf233
Ontologies - Pathways
QuickGOF2Z333
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC1orf233
Atlas of Cancer Signalling NetworkC1orf233
Wikipedia pathwaysC1orf233
Orthology - Evolution
OrthoDB643988
GeneTree (enSembl)ENSG00000228594
Phylogenetic Trees/Animal Genes : TreeFamC1orf233
HOVERGENF2Z333
HOGENOMF2Z333
Homologs : HomoloGeneC1orf233
Homology/Alignments : Family Browser (UCSC)C1orf233
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf233 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf233
dbVarC1orf233
ClinVarC1orf233
1000_GenomesC1orf233 
Exome Variant ServerC1orf233
ExAC (Exome Aggregation Consortium)C1orf233 (select the gene name)
Genetic variants : HAPMAP643988
Genomic Variants (DGV)C1orf233 [DGVbeta]
DECIPHER (Syndromes)1:1533388-1535476  ENSG00000228594
CONAN: Copy Number AnalysisC1orf233 
Mutations
ICGC Data PortalC1orf233 
TCGA Data PortalC1orf233 
Broad Tumor PortalC1orf233
OASIS PortalC1orf233 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf233  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf233
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf233
DgiDB (Drug Gene Interaction Database)C1orf233
DoCM (Curated mutations)C1orf233 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf233 (select a term)
intoGenC1orf233
Cancer3DC1orf233(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf233
Genetic Testing Registry C1orf233
NextProtF2Z333 [Medical]
TSGene643988
GENETestsC1orf233
Huge Navigator C1orf233 [HugePedia]
snp3D : Map Gene to Disease643988
BioCentury BCIQC1orf233
ClinGenC1orf233
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643988
Clinical trialC1orf233
Miscellaneous
canSAR (ICR)C1orf233 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf233
EVEXC1orf233
GoPubMedC1orf233
iHOPC1orf233
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:57:01 CET 2017

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