Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf234 (chromosome 1 open reading frame 234)

Identity

Other alias-
HGNC (Hugo) C1orf234
LocusID (NCBI) 729059
Atlas_Id 61084
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 23337327 and ends at 23342343 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf234   44651
Cards
Entrez_Gene (NCBI)C1orf234  729059  chromosome 1 open reading frame 234
Aliases
GeneCards (Weizmann)C1orf234
Ensembl hg19 (Hinxton)ENSG00000227868 [Gene_View]  chr1:23337327-23342343 [Contig_View]  C1orf234 [Vega]
Ensembl hg38 (Hinxton)ENSG00000227868 [Gene_View]  chr1:23337327-23342343 [Contig_View]  C1orf234 [Vega]
ICGC DataPortalENSG00000227868
TCGA cBioPortalC1orf234
AceView (NCBI)C1orf234
Genatlas (Paris)C1orf234
WikiGenes729059
SOURCE (Princeton)C1orf234
Genetics Home Reference (NIH)C1orf234
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf234  -     chr1:23337327-23342343 -  1p36.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf234  -     1p36.12   [Description]    (hg38-Dec_2013)
EnsemblC1orf234 - 1p36.12 [CytoView hg19]  C1orf234 - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBIC1orf234 [Mapview hg19]  C1orf234 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI652913 BX351337 BX377446 LN607850 LN607851
RefSeq transcript (Entrez)NM_001242521
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)C1orf234
Cluster EST : UnigeneHs.236896 [ NCBI ]
CGAP (NCI)Hs.236896
Alternative Splicing GalleryENSG00000227868
Gene ExpressionC1orf234 [ NCBI-GEO ]   C1orf234 [ EBI - ARRAY_EXPRESS ]   C1orf234 [ SEEK ]   C1orf234 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf234 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729059
GTEX Portal (Tissue expression)C1orf234
Protein : pattern, domain, 3D structure
UniProt/SwissProtH3BTG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH3BTG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH3BTG2
Splice isoforms : SwissVarH3BTG2
PhosPhoSitePlusH3BTG2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf234
DMDM Disease mutations729059
Blocks (Seattle)C1orf234
SuperfamilyH3BTG2
Human Protein AtlasENSG00000227868
Peptide AtlasH3BTG2
IPIIPI00746430   
Protein Interaction databases
DIP (DOE-UCLA)H3BTG2
IntAct (EBI)H3BTG2
FunCoupENSG00000227868
BioGRIDC1orf234
STRING (EMBL)C1orf234
ZODIACC1orf234
Ontologies - Pathways
QuickGOH3BTG2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf234
Atlas of Cancer Signalling NetworkC1orf234
Wikipedia pathwaysC1orf234
Orthology - Evolution
OrthoDB729059
GeneTree (enSembl)ENSG00000227868
Phylogenetic Trees/Animal Genes : TreeFamC1orf234
HOVERGENH3BTG2
HOGENOMH3BTG2
Homologs : HomoloGeneC1orf234
Homology/Alignments : Family Browser (UCSC)C1orf234
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf234 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf234
dbVarC1orf234
ClinVarC1orf234
1000_GenomesC1orf234 
Exome Variant ServerC1orf234
ExAC (Exome Aggregation Consortium)C1orf234 (select the gene name)
Genetic variants : HAPMAP729059
Genomic Variants (DGV)C1orf234 [DGVbeta]
DECIPHER (Syndromes)1:23337327-23342343  ENSG00000227868
CONAN: Copy Number AnalysisC1orf234 
Mutations
ICGC Data PortalC1orf234 
TCGA Data PortalC1orf234 
Broad Tumor PortalC1orf234
OASIS PortalC1orf234 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC1orf234
BioMutasearch C1orf234
DgiDB (Drug Gene Interaction Database)C1orf234
DoCM (Curated mutations)C1orf234 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf234 (select a term)
intoGenC1orf234
Cancer3DC1orf234(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf234
Genetic Testing Registry C1orf234
NextProtH3BTG2 [Medical]
TSGene729059
GENETestsC1orf234
Huge Navigator C1orf234 [HugePedia]
snp3D : Map Gene to Disease729059
BioCentury BCIQC1orf234
ClinGenC1orf234
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729059
Clinical trialC1orf234
Miscellaneous
canSAR (ICR)C1orf234 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf234
EVEXC1orf234
GoPubMedC1orf234
iHOPC1orf234
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:01 CET 2017

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