Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C1orf27 (chromosome 1 open reading frame 27)

Identity

Alias_symbol (synonym)FLJ20505
odr-4
TTG1
Other aliasODR4
HGNC (Hugo) C1orf27
LocusID (NCBI) 54953
Atlas_Id 61085
Location 1q31.1  [Link to chromosome band 1q31]
Location_base_pair Starts at 186375758 and ends at 186421371 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C1orf21 (1q25.3) / C1orf27 (1q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf27   24299
Cards
Entrez_Gene (NCBI)C1orf27  54953  chromosome 1 open reading frame 27
AliasesODR4; TTG1; odr-4
GeneCards (Weizmann)C1orf27
Ensembl hg19 (Hinxton)ENSG00000157181 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157181 [Gene_View]  chr1:186375758-186421371 [Contig_View]  C1orf27 [Vega]
ICGC DataPortalENSG00000157181
TCGA cBioPortalC1orf27
AceView (NCBI)C1orf27
Genatlas (Paris)C1orf27
WikiGenes54953
SOURCE (Princeton)C1orf27
Genetics Home Reference (NIH)C1orf27
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf27  -     chr1:186375758-186421371 +  1q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf27  -     1q31.1   [Description]    (hg19-Feb_2009)
EnsemblC1orf27 - 1q31.1 [CytoView hg19]  C1orf27 - 1q31.1 [CytoView hg38]
Mapping of homologs : NCBIC1orf27 [Mapview hg19]  C1orf27 [Mapview hg38]
OMIM609335   
Gene and transcription
Genbank (Entrez)AF214011 AK000171 AK000512 AK026086 AK298107
RefSeq transcript (Entrez)NM_001164245 NM_001164246 NM_017847
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf27
Cluster EST : UnigeneHs.371210 [ NCBI ]
CGAP (NCI)Hs.371210
Alternative Splicing GalleryENSG00000157181
Gene ExpressionC1orf27 [ NCBI-GEO ]   C1orf27 [ EBI - ARRAY_EXPRESS ]   C1orf27 [ SEEK ]   C1orf27 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54953
GTEX Portal (Tissue expression)C1orf27
Human Protein AtlasENSG00000157181-C1orf27 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SWX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SWX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SWX8
Splice isoforms : SwissVarQ5SWX8
PhosPhoSitePlusQ5SWX8
Domains : Interpro (EBI)ODR-4-like   
Domain families : Pfam (Sanger)ODR4-like (PF14778)   
Domain families : Pfam (NCBI)pfam14778   
Conserved Domain (NCBI)C1orf27
DMDM Disease mutations54953
Blocks (Seattle)C1orf27
SuperfamilyQ5SWX8
Human Protein Atlas [tissue]ENSG00000157181-C1orf27 [tissue]
Peptide AtlasQ5SWX8
HPRD12723
IPIIPI00386043   IPI00855720   IPI00855707   IPI00940977   IPI00910095   
Protein Interaction databases
DIP (DOE-UCLA)Q5SWX8
IntAct (EBI)Q5SWX8
FunCoupENSG00000157181
BioGRIDC1orf27
STRING (EMBL)C1orf27
ZODIACC1orf27
Ontologies - Pathways
QuickGOQ5SWX8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC1orf27
Atlas of Cancer Signalling NetworkC1orf27
Wikipedia pathwaysC1orf27
Orthology - Evolution
OrthoDB54953
GeneTree (enSembl)ENSG00000157181
Phylogenetic Trees/Animal Genes : TreeFamC1orf27
HOVERGENQ5SWX8
HOGENOMQ5SWX8
Homologs : HomoloGeneC1orf27
Homology/Alignments : Family Browser (UCSC)C1orf27
Gene fusions - Rearrangements
Tumor Fusion PortalC1orf27
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf27
dbVarC1orf27
ClinVarC1orf27
1000_GenomesC1orf27 
Exome Variant ServerC1orf27
ExAC (Exome Aggregation Consortium)ENSG00000157181
GNOMAD BrowserENSG00000157181
Genetic variants : HAPMAP54953
Genomic Variants (DGV)C1orf27 [DGVbeta]
DECIPHERC1orf27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf27 
Mutations
ICGC Data PortalC1orf27 
TCGA Data PortalC1orf27 
Broad Tumor PortalC1orf27
OASIS PortalC1orf27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf27
DgiDB (Drug Gene Interaction Database)C1orf27
DoCM (Curated mutations)C1orf27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf27 (select a term)
intoGenC1orf27
Cancer3DC1orf27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609335   
Orphanet
DisGeNETC1orf27
MedgenC1orf27
Genetic Testing Registry C1orf27
NextProtQ5SWX8 [Medical]
TSGene54953
GENETestsC1orf27
Target ValidationC1orf27
Huge Navigator C1orf27 [HugePedia]
snp3D : Map Gene to Disease54953
BioCentury BCIQC1orf27
ClinGenC1orf27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54953
Chemical/Pharm GKB GenePA134934744
Clinical trialC1orf27
Miscellaneous
canSAR (ICR)C1orf27 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf27
EVEXC1orf27
GoPubMedC1orf27
iHOPC1orf27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:44:48 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.