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C1orf35 (chromosome 1 open reading frame 35)

Identity

Alias_symbol (synonym)MGC4174
MMTAG2
Other alias
HGNC (Hugo) C1orf35
LocusID (NCBI) 79169
Atlas_Id 61086
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228100727 and ends at 228103462 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf35   19032
Cards
Entrez_Gene (NCBI)C1orf35  79169  chromosome 1 open reading frame 35
AliasesMMTAG2
GeneCards (Weizmann)C1orf35
Ensembl hg19 (Hinxton)ENSG00000143793 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143793 [Gene_View]  chr1:228100727-228103462 [Contig_View]  C1orf35 [Vega]
ICGC DataPortalENSG00000143793
TCGA cBioPortalC1orf35
AceView (NCBI)C1orf35
Genatlas (Paris)C1orf35
WikiGenes79169
SOURCE (Princeton)C1orf35
Genetics Home Reference (NIH)C1orf35
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf35  -     chr1:228100727-228103462 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf35  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblC1orf35 - 1q42.13 [CytoView hg19]  C1orf35 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIC1orf35 [Mapview hg19]  C1orf35 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123377 AK126087 AY137773 BC002843 BC062585
RefSeq transcript (Entrez)NM_024319
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf35
Cluster EST : UnigeneHs.445952 [ NCBI ]
CGAP (NCI)Hs.445952
Alternative Splicing GalleryENSG00000143793
Gene ExpressionC1orf35 [ NCBI-GEO ]   C1orf35 [ EBI - ARRAY_EXPRESS ]   C1orf35 [ SEEK ]   C1orf35 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf35 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79169
GTEX Portal (Tissue expression)C1orf35
Human Protein AtlasENSG00000143793-C1orf35 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BU76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BU76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BU76
Splice isoforms : SwissVarQ9BU76
PhosPhoSitePlusQ9BU76
Domains : Interpro (EBI)Kinase_phosphorylation_domain   
Domain families : Pfam (Sanger)MMtag (PF10159)   
Domain families : Pfam (NCBI)pfam10159   
Conserved Domain (NCBI)C1orf35
DMDM Disease mutations79169
Blocks (Seattle)C1orf35
SuperfamilyQ9BU76
Human Protein Atlas [tissue]ENSG00000143793-C1orf35 [tissue]
Peptide AtlasQ9BU76
HPRD08512
IPIIPI00293746   IPI00446669   IPI00646155   IPI00642240   
Protein Interaction databases
DIP (DOE-UCLA)Q9BU76
IntAct (EBI)Q9BU76
FunCoupENSG00000143793
BioGRIDC1orf35
STRING (EMBL)C1orf35
ZODIACC1orf35
Ontologies - Pathways
QuickGOQ9BU76
Ontology : AmiGORNA binding  protein binding  extracellular region  secretory granule lumen  neutrophil degranulation  ficolin-1-rich granule lumen  
Ontology : EGO-EBIRNA binding  protein binding  extracellular region  secretory granule lumen  neutrophil degranulation  ficolin-1-rich granule lumen  
NDEx NetworkC1orf35
Atlas of Cancer Signalling NetworkC1orf35
Wikipedia pathwaysC1orf35
Orthology - Evolution
OrthoDB79169
GeneTree (enSembl)ENSG00000143793
Phylogenetic Trees/Animal Genes : TreeFamC1orf35
HOVERGENQ9BU76
HOGENOMQ9BU76
Homologs : HomoloGeneC1orf35
Homology/Alignments : Family Browser (UCSC)C1orf35
Gene fusions - Rearrangements
Tumor Fusion PortalC1orf35
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf35
dbVarC1orf35
ClinVarC1orf35
1000_GenomesC1orf35 
Exome Variant ServerC1orf35
ExAC (Exome Aggregation Consortium)ENSG00000143793
GNOMAD BrowserENSG00000143793
Genetic variants : HAPMAP79169
Genomic Variants (DGV)C1orf35 [DGVbeta]
DECIPHERC1orf35 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf35 
Mutations
ICGC Data PortalC1orf35 
TCGA Data PortalC1orf35 
Broad Tumor PortalC1orf35
OASIS PortalC1orf35 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf35  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf35
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf35
DgiDB (Drug Gene Interaction Database)C1orf35
DoCM (Curated mutations)C1orf35 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf35 (select a term)
intoGenC1orf35
Cancer3DC1orf35(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC1orf35
MedgenC1orf35
Genetic Testing Registry C1orf35
NextProtQ9BU76 [Medical]
TSGene79169
GENETestsC1orf35
Target ValidationC1orf35
Huge Navigator C1orf35 [HugePedia]
snp3D : Map Gene to Disease79169
BioCentury BCIQC1orf35
ClinGenC1orf35
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79169
Chemical/Pharm GKB GenePA38781
Clinical trialC1orf35
Miscellaneous
canSAR (ICR)C1orf35 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf35
EVEXC1orf35
GoPubMedC1orf35
iHOPC1orf35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 12:59:30 CET 2017

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