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C1orf50 (chromosome 1 open reading frame 50)

Identity

Alias_symbol (synonym)MGC955
Other alias-
HGNC (Hugo) C1orf50
LocusID (NCBI) 79078
Atlas_Id 61087
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 42767245 and ends at 42775742 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C1orf50 (1p34.2) / KCTD2 (17q25.1)EZR (6q25.3) / C1orf50 (1p34.2)SSH1 (12q24.11) / C1orf50 (1p34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf50   28795
Cards
Entrez_Gene (NCBI)C1orf50  79078  chromosome 1 open reading frame 50
Aliases
GeneCards (Weizmann)C1orf50
Ensembl hg19 (Hinxton)ENSG00000164008 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164008 [Gene_View]  chr1:42767245-42775742 [Contig_View]  C1orf50 [Vega]
ICGC DataPortalENSG00000164008
TCGA cBioPortalC1orf50
AceView (NCBI)C1orf50
Genatlas (Paris)C1orf50
WikiGenes79078
SOURCE (Princeton)C1orf50
Genetics Home Reference (NIH)C1orf50
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf50  -     chr1:42767245-42775742 +  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf50  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblC1orf50 - 1p34.2 [CytoView hg19]  C1orf50 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIC1orf50 [Mapview hg19]  C1orf50 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA741374 BC001508 BC001711 BE464824 BM702424
RefSeq transcript (Entrez)NM_024097
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf50
Cluster EST : UnigeneHs.148845 [ NCBI ]
CGAP (NCI)Hs.148845
Alternative Splicing GalleryENSG00000164008
Gene ExpressionC1orf50 [ NCBI-GEO ]   C1orf50 [ EBI - ARRAY_EXPRESS ]   C1orf50 [ SEEK ]   C1orf50 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf50 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79078
GTEX Portal (Tissue expression)C1orf50
Human Protein AtlasENSG00000164008-C1orf50 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BV19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BV19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BV19
Splice isoforms : SwissVarQ9BV19
PhosPhoSitePlusQ9BV19
Domains : Interpro (EBI)DUF2452   
Domain families : Pfam (Sanger)DUF2452 (PF10504)   
Domain families : Pfam (NCBI)pfam10504   
Conserved Domain (NCBI)C1orf50
DMDM Disease mutations79078
Blocks (Seattle)C1orf50
SuperfamilyQ9BV19
Human Protein Atlas [tissue]ENSG00000164008-C1orf50 [tissue]
Peptide AtlasQ9BV19
HPRD14714
IPIIPI00012198   IPI00647031   IPI00647562   
Protein Interaction databases
DIP (DOE-UCLA)Q9BV19
IntAct (EBI)Q9BV19
FunCoupENSG00000164008
BioGRIDC1orf50
STRING (EMBL)C1orf50
ZODIACC1orf50
Ontologies - Pathways
QuickGOQ9BV19
Ontology : AmiGOprotein binding  identical protein binding  
Ontology : EGO-EBIprotein binding  identical protein binding  
NDEx NetworkC1orf50
Atlas of Cancer Signalling NetworkC1orf50
Wikipedia pathwaysC1orf50
Orthology - Evolution
OrthoDB79078
GeneTree (enSembl)ENSG00000164008
Phylogenetic Trees/Animal Genes : TreeFamC1orf50
HOVERGENQ9BV19
HOGENOMQ9BV19
Homologs : HomoloGeneC1orf50
Homology/Alignments : Family Browser (UCSC)C1orf50
Gene fusions - Rearrangements
Tumor Fusion PortalC1orf50
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf50 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf50
dbVarC1orf50
ClinVarC1orf50
1000_GenomesC1orf50 
Exome Variant ServerC1orf50
ExAC (Exome Aggregation Consortium)ENSG00000164008
GNOMAD BrowserENSG00000164008
Genetic variants : HAPMAP79078
Genomic Variants (DGV)C1orf50 [DGVbeta]
DECIPHERC1orf50 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf50 
Mutations
ICGC Data PortalC1orf50 
TCGA Data PortalC1orf50 
Broad Tumor PortalC1orf50
OASIS PortalC1orf50 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf50  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf50
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf50
DgiDB (Drug Gene Interaction Database)C1orf50
DoCM (Curated mutations)C1orf50 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf50 (select a term)
intoGenC1orf50
Cancer3DC1orf50(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC1orf50
MedgenC1orf50
Genetic Testing Registry C1orf50
NextProtQ9BV19 [Medical]
TSGene79078
GENETestsC1orf50
Target ValidationC1orf50
Huge Navigator C1orf50 [HugePedia]
snp3D : Map Gene to Disease79078
BioCentury BCIQC1orf50
ClinGenC1orf50
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79078
Chemical/Pharm GKB GenePA134861089
Clinical trialC1orf50
Miscellaneous
canSAR (ICR)C1orf50 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf50
EVEXC1orf50
GoPubMedC1orf50
iHOPC1orf50
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 12:59:30 CET 2017

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