Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C1orf52 (chromosome 1 open reading frame 52)

Identity

Alias_symbol (synonym)gm117
FLJ44982
Other alias
HGNC (Hugo) C1orf52
LocusID (NCBI) 148423
Atlas_Id 61088
Location 1p22.3  [Link to chromosome band 1p22]
Location_base_pair Starts at 85249954 and ends at 85259672 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf52   24871
Cards
Entrez_Gene (NCBI)C1orf52  148423  chromosome 1 open reading frame 52
Aliasesgm117
GeneCards (Weizmann)C1orf52
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:85249954-85259672 [Contig_View]  C1orf52 [Vega]
TCGA cBioPortalC1orf52
AceView (NCBI)C1orf52
Genatlas (Paris)C1orf52
WikiGenes148423
SOURCE (Princeton)C1orf52
Genetics Home Reference (NIH)C1orf52
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf52  -     chr1:85249954-85259672 -  1p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf52  -     1p22.3   [Description]    (hg19-Feb_2009)
EnsemblC1orf52 - 1p22.3 [CytoView hg19]  C1orf52 - 1p22.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf52 [Mapview hg19]  C1orf52 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF387611 AF387612 AK126929 AY486331 AY486332
RefSeq transcript (Entrez)NM_198077
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf52
Cluster EST : UnigeneHs.26226 [ NCBI ]
CGAP (NCI)Hs.26226
Gene ExpressionC1orf52 [ NCBI-GEO ]   C1orf52 [ EBI - ARRAY_EXPRESS ]   C1orf52 [ SEEK ]   C1orf52 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148423
GTEX Portal (Tissue expression)C1orf52
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6N3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6N3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6N3
Splice isoforms : SwissVarQ8N6N3
PhosPhoSitePlusQ8N6N3
Domains : Interpro (EBI)DUF4660   
Domain families : Pfam (Sanger)DUF4660 (PF15559)   
Domain families : Pfam (NCBI)pfam15559   
Conserved Domain (NCBI)C1orf52
DMDM Disease mutations148423
Blocks (Seattle)C1orf52
SuperfamilyQ8N6N3
Peptide AtlasQ8N6N3
HPRD16637
IPIIPI00291401   IPI00646214   IPI00382964   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6N3
IntAct (EBI)Q8N6N3
BioGRIDC1orf52
STRING (EMBL)C1orf52
ZODIACC1orf52
Ontologies - Pathways
QuickGOQ8N6N3
Ontology : AmiGORNA binding  nucleus  
Ontology : EGO-EBIRNA binding  nucleus  
NDEx NetworkC1orf52
Atlas of Cancer Signalling NetworkC1orf52
Wikipedia pathwaysC1orf52
Orthology - Evolution
OrthoDB148423
Phylogenetic Trees/Animal Genes : TreeFamC1orf52
HOVERGENQ8N6N3
HOGENOMQ8N6N3
Homologs : HomoloGeneC1orf52
Homology/Alignments : Family Browser (UCSC)C1orf52
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf52
dbVarC1orf52
ClinVarC1orf52
1000_GenomesC1orf52 
Exome Variant ServerC1orf52
ExAC (Exome Aggregation Consortium)C1orf52 (select the gene name)
Genetic variants : HAPMAP148423
Genomic Variants (DGV)C1orf52 [DGVbeta]
DECIPHERC1orf52 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf52 
Mutations
ICGC Data PortalC1orf52 
TCGA Data PortalC1orf52 
Broad Tumor PortalC1orf52
OASIS PortalC1orf52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf52  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf52
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf52
DgiDB (Drug Gene Interaction Database)C1orf52
DoCM (Curated mutations)C1orf52 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf52 (select a term)
intoGenC1orf52
Cancer3DC1orf52(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf52
Genetic Testing Registry C1orf52
NextProtQ8N6N3 [Medical]
TSGene148423
GENETestsC1orf52
Target ValidationC1orf52
Huge Navigator C1orf52 [HugePedia]
snp3D : Map Gene to Disease148423
BioCentury BCIQC1orf52
ClinGenC1orf52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148423
Chemical/Pharm GKB GenePA142672503
Clinical trialC1orf52
Miscellaneous
canSAR (ICR)C1orf52 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf52
EVEXC1orf52
GoPubMedC1orf52
iHOPC1orf52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:55 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.