Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf53 (chromosome 1 open reading frame 53)

Identity

Other alias-
HGNC (Hugo) C1orf53
LocusID (NCBI) 388722
Atlas_Id 61089
Location 1q31.3  [Link to chromosome band 1q31]
Location_base_pair Starts at 197902552 and ends at 197907367 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf53   30003
Cards
Entrez_Gene (NCBI)C1orf53  388722  chromosome 1 open reading frame 53
Aliases
GeneCards (Weizmann)C1orf53
Ensembl hg19 (Hinxton)ENSG00000203724 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203724 [Gene_View]  chr1:197902552-197907367 [Contig_View]  C1orf53 [Vega]
ICGC DataPortalENSG00000203724
TCGA cBioPortalC1orf53
AceView (NCBI)C1orf53
Genatlas (Paris)C1orf53
WikiGenes388722
SOURCE (Princeton)C1orf53
Genetics Home Reference (NIH)C1orf53
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf53  -     chr1:197902552-197907367 +  1q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf53  -     1q31.3   [Description]    (hg19-Feb_2009)
EnsemblC1orf53 - 1q31.3 [CytoView hg19]  C1orf53 - 1q31.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf53 [Mapview hg19]  C1orf53 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC038214 BC130608 BC130634 HQ258066
RefSeq transcript (Entrez)NM_001024594
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf53
Cluster EST : UnigeneHs.61329 [ NCBI ]
CGAP (NCI)Hs.61329
Alternative Splicing GalleryENSG00000203724
Gene ExpressionC1orf53 [ NCBI-GEO ]   C1orf53 [ EBI - ARRAY_EXPRESS ]   C1orf53 [ SEEK ]   C1orf53 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf53 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388722
GTEX Portal (Tissue expression)C1orf53
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VUE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VUE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VUE5
Splice isoforms : SwissVarQ5VUE5
PhosPhoSitePlusQ5VUE5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf53
DMDM Disease mutations388722
Blocks (Seattle)C1orf53
SuperfamilyQ5VUE5
Human Protein AtlasENSG00000203724
Peptide AtlasQ5VUE5
HPRD18611
IPIIPI00374044   IPI00645554   
Protein Interaction databases
DIP (DOE-UCLA)Q5VUE5
IntAct (EBI)Q5VUE5
FunCoupENSG00000203724
BioGRIDC1orf53
STRING (EMBL)C1orf53
ZODIACC1orf53
Ontologies - Pathways
QuickGOQ5VUE5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf53
Atlas of Cancer Signalling NetworkC1orf53
Wikipedia pathwaysC1orf53
Orthology - Evolution
OrthoDB388722
GeneTree (enSembl)ENSG00000203724
Phylogenetic Trees/Animal Genes : TreeFamC1orf53
HOVERGENQ5VUE5
HOGENOMQ5VUE5
Homologs : HomoloGeneC1orf53
Homology/Alignments : Family Browser (UCSC)C1orf53
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf53 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf53
dbVarC1orf53
ClinVarC1orf53
1000_GenomesC1orf53 
Exome Variant ServerC1orf53
ExAC (Exome Aggregation Consortium)C1orf53 (select the gene name)
Genetic variants : HAPMAP388722
Genomic Variants (DGV)C1orf53 [DGVbeta]
DECIPHERC1orf53 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf53 
Mutations
ICGC Data PortalC1orf53 
TCGA Data PortalC1orf53 
Broad Tumor PortalC1orf53
OASIS PortalC1orf53 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf53  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf53
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf53
DgiDB (Drug Gene Interaction Database)C1orf53
DoCM (Curated mutations)C1orf53 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf53 (select a term)
intoGenC1orf53
Cancer3DC1orf53(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf53
Genetic Testing Registry C1orf53
NextProtQ5VUE5 [Medical]
TSGene388722
GENETestsC1orf53
Huge Navigator C1orf53 [HugePedia]
snp3D : Map Gene to Disease388722
BioCentury BCIQC1orf53
ClinGenC1orf53
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388722
Chemical/Pharm GKB GenePA142672504
Clinical trialC1orf53
Miscellaneous
canSAR (ICR)C1orf53 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf53
EVEXC1orf53
GoPubMedC1orf53
iHOPC1orf53
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:03:10 CEST 2017

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