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C1orf54 (chromosome 1 open reading frame 54)

Identity

Alias_symbol (synonym)FLJ23221
Other alias-
HGNC (Hugo) C1orf54
LocusID (NCBI) 79630
Atlas_Id 61090
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 150272284 and ends at 150280924 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PRUNE (1q21.3) / C1orf54 (1q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf54   26258
Cards
Entrez_Gene (NCBI)C1orf54  79630  chromosome 1 open reading frame 54
Aliases
GeneCards (Weizmann)C1orf54
Ensembl hg19 (Hinxton)ENSG00000118292 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118292 [Gene_View]  chr1:150272284-150280924 [Contig_View]  C1orf54 [Vega]
ICGC DataPortalENSG00000118292
TCGA cBioPortalC1orf54
AceView (NCBI)C1orf54
Genatlas (Paris)C1orf54
WikiGenes79630
SOURCE (Princeton)C1orf54
Genetics Home Reference (NIH)C1orf54
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf54  -     chr1:150272284-150280924 +  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf54  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblC1orf54 - 1q21.2 [CytoView hg19]  C1orf54 - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBIC1orf54 [Mapview hg19]  C1orf54 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA095731 AI004135 AI342055 AK026874 AM392820
RefSeq transcript (Entrez)NM_001301039 NM_001301040 NM_001301041 NM_001301042 NM_024579
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf54
Cluster EST : UnigeneHs.91283 [ NCBI ]
CGAP (NCI)Hs.91283
Alternative Splicing GalleryENSG00000118292
Gene ExpressionC1orf54 [ NCBI-GEO ]   C1orf54 [ EBI - ARRAY_EXPRESS ]   C1orf54 [ SEEK ]   C1orf54 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79630
GTEX Portal (Tissue expression)C1orf54
Human Protein AtlasENSG00000118292-C1orf54 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWF1
Splice isoforms : SwissVarQ8WWF1
PhosPhoSitePlusQ8WWF1
Domains : Interpro (EBI)DUF4634   
Domain families : Pfam (Sanger)DUF4634 (PF15465)   
Domain families : Pfam (NCBI)pfam15465   
Conserved Domain (NCBI)C1orf54
DMDM Disease mutations79630
Blocks (Seattle)C1orf54
SuperfamilyQ8WWF1
Human Protein Atlas [tissue]ENSG00000118292-C1orf54 [tissue]
Peptide AtlasQ8WWF1
HPRD08020
IPIIPI00291771   IPI00514799   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWF1
IntAct (EBI)Q8WWF1
FunCoupENSG00000118292
BioGRIDC1orf54
STRING (EMBL)C1orf54
ZODIACC1orf54
Ontologies - Pathways
QuickGOQ8WWF1
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkC1orf54
Atlas of Cancer Signalling NetworkC1orf54
Wikipedia pathwaysC1orf54
Orthology - Evolution
OrthoDB79630
GeneTree (enSembl)ENSG00000118292
Phylogenetic Trees/Animal Genes : TreeFamC1orf54
HOVERGENQ8WWF1
HOGENOMQ8WWF1
Homologs : HomoloGeneC1orf54
Homology/Alignments : Family Browser (UCSC)C1orf54
Gene fusions - Rearrangements
Tumor Fusion PortalC1orf54
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf54 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf54
dbVarC1orf54
ClinVarC1orf54
1000_GenomesC1orf54 
Exome Variant ServerC1orf54
ExAC (Exome Aggregation Consortium)ENSG00000118292
GNOMAD BrowserENSG00000118292
Genetic variants : HAPMAP79630
Genomic Variants (DGV)C1orf54 [DGVbeta]
DECIPHERC1orf54 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf54 
Mutations
ICGC Data PortalC1orf54 
TCGA Data PortalC1orf54 
Broad Tumor PortalC1orf54
OASIS PortalC1orf54 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf54  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf54
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf54
DgiDB (Drug Gene Interaction Database)C1orf54
DoCM (Curated mutations)C1orf54 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf54 (select a term)
intoGenC1orf54
Cancer3DC1orf54(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC1orf54
MedgenC1orf54
Genetic Testing Registry C1orf54
NextProtQ8WWF1 [Medical]
TSGene79630
GENETestsC1orf54
Target ValidationC1orf54
Huge Navigator C1orf54 [HugePedia]
snp3D : Map Gene to Disease79630
BioCentury BCIQC1orf54
ClinGenC1orf54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79630
Chemical/Pharm GKB GenePA142672505
Clinical trialC1orf54
Miscellaneous
canSAR (ICR)C1orf54 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf54
EVEXC1orf54
GoPubMedC1orf54
iHOPC1orf54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:21:20 CET 2017

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