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C1orf56 (chromosome 1 open reading frame 56)

Identity

Alias_symbol (synonym)FLJ20519
MENT
Other alias
HGNC (Hugo) C1orf56
LocusID (NCBI) 54964
Atlas_Id 53812
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151020259 and ends at 151023871 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ADGRB3 (6q12) / C1orf56 (1q21.3)C1orf56 (1q21.3) / CDC42SE1 (1q21.3)CDC42SE1 (1q21.3) / C1orf56 (1q21.3)
PIP5K1A (1q21.3) / C1orf56 (1q21.3)PIP5K1A 1q21.3 / C1orf56 1q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf56   26045
Cards
Entrez_Gene (NCBI)C1orf56  54964  chromosome 1 open reading frame 56
AliasesMENT
GeneCards (Weizmann)C1orf56
Ensembl hg19 (Hinxton)ENSG00000143443 [Gene_View]  chr1:151020259-151023871 [Contig_View]  C1orf56 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143443 [Gene_View]  chr1:151020259-151023871 [Contig_View]  C1orf56 [Vega]
ICGC DataPortalENSG00000143443
TCGA cBioPortalC1orf56
AceView (NCBI)C1orf56
Genatlas (Paris)C1orf56
WikiGenes54964
SOURCE (Princeton)C1orf56
Genetics Home Reference (NIH)C1orf56
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf56  -     chr1:151020259-151023871 +  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf56  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblC1orf56 - 1q21.3 [CytoView hg19]  C1orf56 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf56 [Mapview hg19]  C1orf56 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000526 AK301712 AK315680 AY358436 BC002469
RefSeq transcript (Entrez)NM_017860
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)C1orf56
Cluster EST : UnigeneHs.549171 [ NCBI ]
CGAP (NCI)Hs.549171
Alternative Splicing GalleryENSG00000143443
Gene ExpressionC1orf56 [ NCBI-GEO ]   C1orf56 [ EBI - ARRAY_EXPRESS ]   C1orf56 [ SEEK ]   C1orf56 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf56 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54964
GTEX Portal (Tissue expression)C1orf56
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUN1
Splice isoforms : SwissVarQ9BUN1
PhosPhoSitePlusQ9BUN1
Domains : Interpro (EBI)MENT   
Domain families : Pfam (Sanger)PMSI1 (PF15322)   
Domain families : Pfam (NCBI)pfam15322   
Conserved Domain (NCBI)C1orf56
DMDM Disease mutations54964
Blocks (Seattle)C1orf56
SuperfamilyQ9BUN1
Human Protein AtlasENSG00000143443
Peptide AtlasQ9BUN1
HPRD08625
IPIIPI00550533   IPI00843753   
Protein Interaction databases
DIP (DOE-UCLA)Q9BUN1
IntAct (EBI)Q9BUN1
FunCoupENSG00000143443
BioGRIDC1orf56
STRING (EMBL)C1orf56
ZODIACC1orf56
Ontologies - Pathways
QuickGOQ9BUN1
Ontology : AmiGOextracellular region  nucleoplasm  cytoplasm  
Ontology : EGO-EBIextracellular region  nucleoplasm  cytoplasm  
NDEx NetworkC1orf56
Atlas of Cancer Signalling NetworkC1orf56
Wikipedia pathwaysC1orf56
Orthology - Evolution
OrthoDB54964
GeneTree (enSembl)ENSG00000143443
Phylogenetic Trees/Animal Genes : TreeFamC1orf56
HOVERGENQ9BUN1
HOGENOMQ9BUN1
Homologs : HomoloGeneC1orf56
Homology/Alignments : Family Browser (UCSC)C1orf56
Gene fusions - Rearrangements
Fusion : MitelmanPIP5K1A/C1orf56 [1q21.3/1q21.3]  [t(1;1)(q21;q21)]  
Fusion: TCGAPIP5K1A 1q21.3 C1orf56 1q21.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf56
dbVarC1orf56
ClinVarC1orf56
1000_GenomesC1orf56 
Exome Variant ServerC1orf56
ExAC (Exome Aggregation Consortium)C1orf56 (select the gene name)
Genetic variants : HAPMAP54964
Genomic Variants (DGV)C1orf56 [DGVbeta]
DECIPHER (Syndromes)1:151020259-151023871  ENSG00000143443
CONAN: Copy Number AnalysisC1orf56 
Mutations
ICGC Data PortalC1orf56 
TCGA Data PortalC1orf56 
Broad Tumor PortalC1orf56
OASIS PortalC1orf56 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf56  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf56
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf56
DgiDB (Drug Gene Interaction Database)C1orf56
DoCM (Curated mutations)C1orf56 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf56 (select a term)
intoGenC1orf56
Cancer3DC1orf56(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf56
Genetic Testing Registry C1orf56
NextProtQ9BUN1 [Medical]
TSGene54964
GENETestsC1orf56
Huge Navigator C1orf56 [HugePedia]
snp3D : Map Gene to Disease54964
BioCentury BCIQC1orf56
ClinGenC1orf56
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54964
Chemical/Pharm GKB GenePA142672507
Clinical trialC1orf56
Miscellaneous
canSAR (ICR)C1orf56 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf56
EVEXC1orf56
GoPubMedC1orf56
iHOPC1orf56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:29 CEST 2017

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