Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf61 (chromosome 1 open reading frame 61)

Identity

Alias_symbol (synonym)CROC4
Other alias
HGNC (Hugo) C1orf61
LocusID (NCBI) 10485
Atlas_Id 54167
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 156374044 and ends at 156399340 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C1orf61 (1q22) / ADD1 (4p16.3)C1orf61 (1q22) / ADD3 (10q25.1)CCT3 (1q22) / C1orf61 (1q22)
MTHFD1 (14q23.3) / C1orf61 (1q22)UBE2G2 (21q22.3) / C1orf61 (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf61   30780
Cards
Entrez_Gene (NCBI)C1orf61  10485  chromosome 1 open reading frame 61
AliasesCROC4
GeneCards (Weizmann)C1orf61
Ensembl hg19 (Hinxton)ENSG00000125462 [Gene_View]  chr1:156374044-156399340 [Contig_View]  C1orf61 [Vega]
Ensembl hg38 (Hinxton)ENSG00000125462 [Gene_View]  chr1:156374044-156399340 [Contig_View]  C1orf61 [Vega]
ICGC DataPortalENSG00000125462
TCGA cBioPortalC1orf61
AceView (NCBI)C1orf61
Genatlas (Paris)C1orf61
WikiGenes10485
SOURCE (Princeton)C1orf61
Genetics Home Reference (NIH)C1orf61
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf61  -     chr1:156374044-156399340 -  1q22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf61  -     1q22   [Description]    (hg38-Dec_2013)
EnsemblC1orf61 - 1q22 [CytoView hg19]  C1orf61 - 1q22 [CytoView hg38]
Mapping of homologs : NCBIC1orf61 [Mapview hg19]  C1orf61 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI264870 AK091014 AK094493 AK095622 AK095626
RefSeq transcript (Entrez)NM_001320453 NM_001320454 NM_001320455 NM_006365
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)C1orf61
Cluster EST : UnigeneHs.380027 [ NCBI ]
CGAP (NCI)Hs.380027
Alternative Splicing GalleryENSG00000125462
Gene ExpressionC1orf61 [ NCBI-GEO ]   C1orf61 [ EBI - ARRAY_EXPRESS ]   C1orf61 [ SEEK ]   C1orf61 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf61 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10485
GTEX Portal (Tissue expression)C1orf61
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13536   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13536  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13536
Splice isoforms : SwissVarQ13536
PhosPhoSitePlusQ13536
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf61
DMDM Disease mutations10485
Blocks (Seattle)C1orf61
SuperfamilyQ13536
Human Protein AtlasENSG00000125462
Peptide AtlasQ13536
HPRD09899
IPIIPI00007374   IPI00384373   IPI00641160   IPI00640463   IPI00513977   IPI00513721   
Protein Interaction databases
DIP (DOE-UCLA)Q13536
IntAct (EBI)Q13536
FunCoupENSG00000125462
BioGRIDC1orf61
STRING (EMBL)C1orf61
ZODIACC1orf61
Ontologies - Pathways
QuickGOQ13536
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkC1orf61
Atlas of Cancer Signalling NetworkC1orf61
Wikipedia pathwaysC1orf61
Orthology - Evolution
OrthoDB10485
GeneTree (enSembl)ENSG00000125462
Phylogenetic Trees/Animal Genes : TreeFamC1orf61
HOVERGENQ13536
HOGENOMQ13536
Homologs : HomoloGeneC1orf61
Homology/Alignments : Family Browser (UCSC)C1orf61
Gene fusions - Rearrangements
Fusion : MitelmanMTHFD1/C1orf61 [14q23.3/1q22]  [t(1;14)(q22;q23)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf61 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf61
dbVarC1orf61
ClinVarC1orf61
1000_GenomesC1orf61 
Exome Variant ServerC1orf61
ExAC (Exome Aggregation Consortium)C1orf61 (select the gene name)
Genetic variants : HAPMAP10485
Genomic Variants (DGV)C1orf61 [DGVbeta]
DECIPHER (Syndromes)1:156374044-156399340  ENSG00000125462
CONAN: Copy Number AnalysisC1orf61 
Mutations
ICGC Data PortalC1orf61 
TCGA Data PortalC1orf61 
Broad Tumor PortalC1orf61
OASIS PortalC1orf61 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf61  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf61
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf61
DgiDB (Drug Gene Interaction Database)C1orf61
DoCM (Curated mutations)C1orf61 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf61 (select a term)
intoGenC1orf61
Cancer3DC1orf61(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf61
Genetic Testing Registry C1orf61
NextProtQ13536 [Medical]
TSGene10485
GENETestsC1orf61
Huge Navigator C1orf61 [HugePedia]
snp3D : Map Gene to Disease10485
BioCentury BCIQC1orf61
ClinGenC1orf61
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10485
Chemical/Pharm GKB GenePA142672511
Clinical trialC1orf61
Miscellaneous
canSAR (ICR)C1orf61 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf61
EVEXC1orf61
GoPubMedC1orf61
iHOPC1orf61
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:58:06 CET 2017

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