Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf64 (chromosome 1 open reading frame 64)

Identity

Alias_symbol (synonym)MGC24047
ERRF
Other alias
HGNC (Hugo) C1orf64
LocusID (NCBI) 149563
Atlas_Id 52706
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 16004236 and ends at 16006695 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf64   28339
Cards
Entrez_Gene (NCBI)C1orf64  149563  chromosome 1 open reading frame 64
AliasesERRF
GeneCards (Weizmann)C1orf64
Ensembl hg19 (Hinxton)ENSG00000183888 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183888 [Gene_View]  chr1:16004236-16006695 [Contig_View]  C1orf64 [Vega]
ICGC DataPortalENSG00000183888
TCGA cBioPortalC1orf64
AceView (NCBI)C1orf64
Genatlas (Paris)C1orf64
WikiGenes149563
SOURCE (Princeton)C1orf64
Genetics Home Reference (NIH)C1orf64
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf64  -     chr1:16004236-16006695 +  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf64  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblC1orf64 - 1p36.13 [CytoView hg19]  C1orf64 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBIC1orf64 [Mapview hg19]  C1orf64 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI732325 AK127425 AW299952 BC017946 DA387602
RefSeq transcript (Entrez)NM_178840
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf64
Cluster EST : UnigeneHs.29190 [ NCBI ]
CGAP (NCI)Hs.29190
Alternative Splicing GalleryENSG00000183888
Gene ExpressionC1orf64 [ NCBI-GEO ]   C1orf64 [ EBI - ARRAY_EXPRESS ]   C1orf64 [ SEEK ]   C1orf64 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf64 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149563
GTEX Portal (Tissue expression)C1orf64
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEQ6
Splice isoforms : SwissVarQ8NEQ6
PhosPhoSitePlusQ8NEQ6
Domains : Interpro (EBI)DUF4654   
Domain families : Pfam (Sanger)DUF4654 (PF15547)   
Domain families : Pfam (NCBI)pfam15547   
Conserved Domain (NCBI)C1orf64
DMDM Disease mutations149563
Blocks (Seattle)C1orf64
SuperfamilyQ8NEQ6
Human Protein AtlasENSG00000183888
Peptide AtlasQ8NEQ6
HPRD14492
IPIIPI00168716   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEQ6
IntAct (EBI)Q8NEQ6
FunCoupENSG00000183888
BioGRIDC1orf64
STRING (EMBL)C1orf64
ZODIACC1orf64
Ontologies - Pathways
QuickGOQ8NEQ6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf64
Atlas of Cancer Signalling NetworkC1orf64
Wikipedia pathwaysC1orf64
Orthology - Evolution
OrthoDB149563
GeneTree (enSembl)ENSG00000183888
Phylogenetic Trees/Animal Genes : TreeFamC1orf64
HOVERGENQ8NEQ6
HOGENOMQ8NEQ6
Homologs : HomoloGeneC1orf64
Homology/Alignments : Family Browser (UCSC)C1orf64
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf64 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf64
dbVarC1orf64
ClinVarC1orf64
1000_GenomesC1orf64 
Exome Variant ServerC1orf64
ExAC (Exome Aggregation Consortium)C1orf64 (select the gene name)
Genetic variants : HAPMAP149563
Genomic Variants (DGV)C1orf64 [DGVbeta]
DECIPHERC1orf64 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf64 
Mutations
ICGC Data PortalC1orf64 
TCGA Data PortalC1orf64 
Broad Tumor PortalC1orf64
OASIS PortalC1orf64 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf64  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf64
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf64
DgiDB (Drug Gene Interaction Database)C1orf64
DoCM (Curated mutations)C1orf64 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf64 (select a term)
intoGenC1orf64
Cancer3DC1orf64(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf64
Genetic Testing Registry C1orf64
NextProtQ8NEQ6 [Medical]
TSGene149563
GENETestsC1orf64
Target ValidationC1orf64
Huge Navigator C1orf64 [HugePedia]
snp3D : Map Gene to Disease149563
BioCentury BCIQC1orf64
ClinGenC1orf64
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149563
Chemical/Pharm GKB GenePA142672514
Clinical trialC1orf64
Miscellaneous
canSAR (ICR)C1orf64 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf64
EVEXC1orf64
GoPubMedC1orf64
iHOPC1orf64
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:26:05 CEST 2017

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