Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf68 (chromosome 1 open reading frame 68)

Identity

Alias_symbol (synonym)LEP7
XP32
Other alias
HGNC (Hugo) C1orf68
LocusID (NCBI) 100129271
Atlas_Id 61091
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152691998 and ends at 152692905 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf68   29468
Cards
Entrez_Gene (NCBI)C1orf68  100129271  chromosome 1 open reading frame 68
AliasesLEP7; XP32
GeneCards (Weizmann)C1orf68
Ensembl hg19 (Hinxton)ENSG00000198854 [Gene_View]  chr1:152691998-152692905 [Contig_View]  C1orf68 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198854 [Gene_View]  chr1:152691998-152692905 [Contig_View]  C1orf68 [Vega]
ICGC DataPortalENSG00000198854
TCGA cBioPortalC1orf68
AceView (NCBI)C1orf68
Genatlas (Paris)C1orf68
WikiGenes100129271
SOURCE (Princeton)C1orf68
Genetics Home Reference (NIH)C1orf68
Genomic and cartography
GoldenPath hg19 (UCSC)C1orf68  -     chr1:152691998-152692905 +  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1orf68  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblC1orf68 - 1q21.3 [CytoView hg19]  C1orf68 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIC1orf68 [Mapview hg19]  C1orf68 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF005081 CU446285 CU457096
RefSeq transcript (Entrez)NM_001024679
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)C1orf68
Cluster EST : UnigeneHs.601077 [ NCBI ]
CGAP (NCI)Hs.601077
Alternative Splicing GalleryENSG00000198854
Gene ExpressionC1orf68 [ NCBI-GEO ]   C1orf68 [ EBI - ARRAY_EXPRESS ]   C1orf68 [ SEEK ]   C1orf68 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf68 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129271
GTEX Portal (Tissue expression)C1orf68
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T750   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T750  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T750
Splice isoforms : SwissVarQ5T750
PhosPhoSitePlusQ5T750
Domains : Interpro (EBI)Skin_specific_32    SPRR/LCE   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf68
DMDM Disease mutations100129271
Blocks (Seattle)C1orf68
SuperfamilyQ5T750
Human Protein AtlasENSG00000198854
Peptide AtlasQ5T750
IPIIPI00023078   
Protein Interaction databases
DIP (DOE-UCLA)Q5T750
IntAct (EBI)Q5T750
FunCoupENSG00000198854
BioGRIDC1orf68
STRING (EMBL)C1orf68
ZODIACC1orf68
Ontologies - Pathways
QuickGOQ5T750
Ontology : AmiGOmolecular_function  epidermis development  extracellular exosome  
Ontology : EGO-EBImolecular_function  epidermis development  extracellular exosome  
NDEx NetworkC1orf68
Atlas of Cancer Signalling NetworkC1orf68
Wikipedia pathwaysC1orf68
Orthology - Evolution
OrthoDB100129271
GeneTree (enSembl)ENSG00000198854
Phylogenetic Trees/Animal Genes : TreeFamC1orf68
HOVERGENQ5T750
HOGENOMQ5T750
Homologs : HomoloGeneC1orf68
Homology/Alignments : Family Browser (UCSC)C1orf68
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf68 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf68
dbVarC1orf68
ClinVarC1orf68
1000_GenomesC1orf68 
Exome Variant ServerC1orf68
ExAC (Exome Aggregation Consortium)C1orf68 (select the gene name)
Genetic variants : HAPMAP100129271
Genomic Variants (DGV)C1orf68 [DGVbeta]
DECIPHER (Syndromes)1:152691998-152692905  ENSG00000198854
CONAN: Copy Number AnalysisC1orf68 
Mutations
ICGC Data PortalC1orf68 
TCGA Data PortalC1orf68 
Broad Tumor PortalC1orf68
OASIS PortalC1orf68 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf68  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf68
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf68
DgiDB (Drug Gene Interaction Database)C1orf68
DoCM (Curated mutations)C1orf68 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf68 (select a term)
intoGenC1orf68
Cancer3DC1orf68(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf68
Genetic Testing Registry C1orf68
NextProtQ5T750 [Medical]
TSGene100129271
GENETestsC1orf68
Huge Navigator C1orf68 [HugePedia]
snp3D : Map Gene to Disease100129271
BioCentury BCIQC1orf68
ClinGenC1orf68
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129271
Chemical/Pharm GKB GenePA142672518
Clinical trialC1orf68
Miscellaneous
canSAR (ICR)C1orf68 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf68
EVEXC1orf68
GoPubMedC1orf68
iHOPC1orf68
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:03 CET 2017

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