Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf74 (chromosome 1 open reading frame 74)

Identity

Alias_symbol (synonym)FLJ25078
Other aliasURLC4
HGNC (Hugo) C1orf74
LocusID (NCBI) 148304
Atlas_Id 61092
Location 1q32.2  [Link to chromosome band 1q32]
Location_base_pair Starts at 209779208 and ends at 209784730 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IRF6 (1q32.2) / C1orf74 (1q32.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf74   26319
Cards
Entrez_Gene (NCBI)C1orf74  148304  chromosome 1 open reading frame 74
AliasesURLC4
GeneCards (Weizmann)C1orf74
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:209779208-209784730 [Contig_View]  C1orf74 [Vega]
TCGA cBioPortalC1orf74
AceView (NCBI)C1orf74
Genatlas (Paris)C1orf74
WikiGenes148304
SOURCE (Princeton)C1orf74
Genetics Home Reference (NIH)C1orf74
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf74  -     chr1:209779208-209784730 -  1q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf74  -     1q32.2   [Description]    (hg19-Feb_2009)
EnsemblC1orf74 - 1q32.2 [CytoView hg19]  C1orf74 - 1q32.2 [CytoView hg38]
Mapping of homologs : NCBIC1orf74 [Mapview hg19]  C1orf74 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB101206 AI922337 AK022798 AK057807 BC039719
RefSeq transcript (Entrez)NM_152485
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf74
Cluster EST : UnigeneHs.634602 [ NCBI ]
CGAP (NCI)Hs.634602
Gene ExpressionC1orf74 [ NCBI-GEO ]   C1orf74 [ EBI - ARRAY_EXPRESS ]   C1orf74 [ SEEK ]   C1orf74 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf74 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148304
GTEX Portal (Tissue expression)C1orf74
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LT6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LT6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LT6
Splice isoforms : SwissVarQ96LT6
PhosPhoSitePlusQ96LT6
Domains : Interpro (EBI)DUF4504   
Domain families : Pfam (Sanger)DUF4504 (PF14953)   
Domain families : Pfam (NCBI)pfam14953   
Conserved Domain (NCBI)C1orf74
DMDM Disease mutations148304
Blocks (Seattle)C1orf74
SuperfamilyQ96LT6
Peptide AtlasQ96LT6
HPRD08682
IPIIPI00065257   
Protein Interaction databases
DIP (DOE-UCLA)Q96LT6
IntAct (EBI)Q96LT6
BioGRIDC1orf74
STRING (EMBL)C1orf74
ZODIACC1orf74
Ontologies - Pathways
QuickGOQ96LT6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf74
Atlas of Cancer Signalling NetworkC1orf74
Wikipedia pathwaysC1orf74
Orthology - Evolution
OrthoDB148304
Phylogenetic Trees/Animal Genes : TreeFamC1orf74
HOVERGENQ96LT6
HOGENOMQ96LT6
Homologs : HomoloGeneC1orf74
Homology/Alignments : Family Browser (UCSC)C1orf74
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf74 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf74
dbVarC1orf74
ClinVarC1orf74
1000_GenomesC1orf74 
Exome Variant ServerC1orf74
ExAC (Exome Aggregation Consortium)C1orf74 (select the gene name)
Genetic variants : HAPMAP148304
Genomic Variants (DGV)C1orf74 [DGVbeta]
DECIPHERC1orf74 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf74 
Mutations
ICGC Data PortalC1orf74 
TCGA Data PortalC1orf74 
Broad Tumor PortalC1orf74
OASIS PortalC1orf74 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf74  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf74
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf74
DgiDB (Drug Gene Interaction Database)C1orf74
DoCM (Curated mutations)C1orf74 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf74 (select a term)
intoGenC1orf74
Cancer3DC1orf74(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf74
Genetic Testing Registry C1orf74
NextProtQ96LT6 [Medical]
TSGene148304
GENETestsC1orf74
Target ValidationC1orf74
Huge Navigator C1orf74 [HugePedia]
snp3D : Map Gene to Disease148304
BioCentury BCIQC1orf74
ClinGenC1orf74
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148304
Chemical/Pharm GKB GenePA142672523
Clinical trialC1orf74
Miscellaneous
canSAR (ICR)C1orf74 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf74
EVEXC1orf74
GoPubMedC1orf74
iHOPC1orf74
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:07 CEST 2017

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